DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
GKENR
Uniprot ID:
Q5JSZ5
Source protein:
Protein PRRC2B
Source gene:
PRRC2B
Class:
DEG_APCC_KENBOX_2
Location:
326:330
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9166
ASA_SCORE:
102.86
COIL:
0.712
CONS_SCORE:
0.6024
DSS_SCORE:
0.6082
HELIX:
0.2632
FCONS_SCORE:
0.9955
RIG_SCORE:
0.6793
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q318H
TCGA-17-Z055
LUAD
TCGA
GKENR
DEG_APCC_KENBOX_2
0.1111
p.G326R
TCGA-AX-A1CE
UCEC
TCGA
GKENR
DEG_APCC_KENBOX_2
0.6457
p.G326R
DO42280
UCEC
ICGC
GKENR
DEG_APCC_KENBOX_2
0.6457
p.G326R
SIDM00217
Colorectal Carcinoma
GDSC
GKENR
DEG_APCC_KENBOX_2
0.6457
p.G326R
SNU-1040
large_intestine
COSMIC
GKENR
DEG_APCC_KENBOX_2
0.6457
p.R338C
TCGA-EO-A3AU
UCEC
TCGA
GKENR
DEG_APCC_KENBOX_2
0.1111
p.R338C
DO43827
UCEC
ICGC
GKENR
DEG_APCC_KENBOX_2
0.1111
p.R338C
SIDM00614
Hepatocellular Carcinoma
GDSC
GKENR
DEG_APCC_KENBOX_2
0.1111
p.R338C
ACH-000848
Liver Cancer
CCLE
GKENR
DEG_APCC_KENBOX_2
0.1111
p.R338C
JHH-7
liver
COSMIC
GKENR
DEG_APCC_KENBOX_2
0.1111
p.R317I
TCGA-IN-A6RL
STAD
TCGA
GKENR
DEG_APCC_KENBOX_2
0.0833
p.R317I
DO51738
STAD
ICGC
GKENR
DEG_APCC_KENBOX_2
0.0833
p.R335H
TCGA-XR-A8TC
LIHC
TCGA
GKENR
DEG_APCC_KENBOX_2
0.1944
p.R335H
DO223920
LIHC
ICGC
GKENR
DEG_APCC_KENBOX_2
0.1944
p.D323N
DO234467
ESAD
ICGC
GKENR
DEG_APCC_KENBOX_2
0.25
p.L333S
DO233869
GACA
ICGC
GKENR
DEG_APCC_KENBOX_2
0.25
p.R338H
ACH-001719
Ovarian Cancer
CCLE
GKENR
DEG_APCC_KENBOX_2
0.1111
Drug responses associated with PRRC2B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13523
Serine/threonine-protein kinase PRP4 homolog
DEG_APCC_KENBOX_2
336:340
GKENR
APC,CDC20,FZR1
0.9861
More...
Q14157
Ubiquitin-associated protein 2-like
DEG_APCC_KENBOX_2
120:124
GKENR
APC,CDC20,FZR1
0.7271
More...
Q5JSZ5
Protein PRRC2B
DEG_APCC_KENBOX_2
326:330
GKENR
APC,CDC20,FZR1
0.9166
More...