DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPESS
Uniprot ID:
Q5SWA1
Source protein:
Protein phosphatase 1 regulatory subunit 15B
Source gene:
PPP1R15B
Class:
DEG_SCF_FBW7_1
Location:
253:258
E3 ligase:
FBXW7
DEGRON score:
0.9912
ASA_SCORE:
71.3
COIL:
0.736
CONS_SCORE:
0.6597
DSS_SCORE:
0.3436
HELIX:
0.1823
FCONS_SCORE:
1.4514
RIG_SCORE:
0.7321
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E246D
TCGA-22-5491
LUSC
TCGA
LTPESS
DEG_SCF_FBW7_1
0.1389
p.E246D
DO26420
LUSC
ICGC
LTPESS
DEG_SCF_FBW7_1
0.1389
p.H264R
TCGA-B5-A3FC
UCEC
TCGA
LTPESS
DEG_SCF_FBW7_1
0.1667
p.H264R
DO41871
UCEC
ICGC
LTPESS
DEG_SCF_FBW7_1
0.1667
p.V248L
TCGA-E9-A244
BRCA
TCGA
LTPESS
DEG_SCF_FBW7_1
0.1944
p.V248L
DO5263
BRCA
ICGC
LTPESS
DEG_SCF_FBW7_1
0.1944
p.R261K
SIDM00656
Burkitt's Lymphoma
GDSC
LTPESS
DEG_SCF_FBW7_1
0.25
p.R261K
SIDM00641
Burkitt's Lymphoma
GDSC
LTPESS
DEG_SCF_FBW7_1
0.25
p.R261K
SIDM01710
Squamous Cell Lung Carcinoma
GDSC
LTPESS
DEG_SCF_FBW7_1
0.25
p.L260P
SIDM00014
Colorectal Carcinoma
GDSC
LTPESS
DEG_SCF_FBW7_1
0.2778
p.L260P
LIM1215
large_intestine
COSMIC
LTPESS
DEG_SCF_FBW7_1
0.2778
p.G249D
SIDM01378
Ovarian Carcinoma
GDSC
LTPESS
DEG_SCF_FBW7_1
0.2222
p.G249D
ACH-000646
Ovarian Cancer
CCLE
LTPESS
DEG_SCF_FBW7_1
0.2222
Drug responses associated with PPP1R15B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPESS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5SWA1
Protein phosphatase 1 regulatory subunit 15B
DEG_SCF_FBW7_1
253:258
LTPESS
FBXW7
0.9912
More...
Q8IWQ3
Serine/threonine-protein kinase BRSK2
DEG_SCF_FBW7_1
508:513
LTPESS
FBXW7
0.9621
More...
Q8TDC3
Serine/threonine-protein kinase BRSK1
DEG_SCF_FBW7_1
582:587
LTPESS
FBXW7
0.9475
More...