DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PNTST
Uniprot ID:
Q9P2D1
Source protein:
Chromodomain-helicase-DNA-binding protein 7
Source gene:
CHD7
Class:
DEG_SPOP_SBC_1
Location:
1904:1908
E3 ligase:
SPOP
DEGRON score:
0.8978
ASA_SCORE:
66.18
COIL:
0.7758
CONS_SCORE:
0.4601
DSS_SCORE:
0.3645
HELIX:
0.1912
FCONS_SCORE:
1.0744
RIG_SCORE:
0.7899
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L1909M
TCGA-AJ-A2QO
UCEC
TCGA
PNTST
DEG_SPOP_SBC_1
0.3056
p.L1909M
TCGA-CN-6988
HNSC
TCGA
PNTST
DEG_SPOP_SBC_1
0.3056
p.L1909M
DO14208
HNSC
ICGC
PNTST
DEG_SPOP_SBC_1
0.3056
p.L1909M
DO42177
UCEC
ICGC
PNTST
DEG_SPOP_SBC_1
0.3056
p.R1914H
TCGA-AP-A0LM
UCEC
TCGA
PNTST
DEG_SPOP_SBC_1
0.1667
p.R1914H
TCGA-BR-6452
STAD
TCGA
PNTST
DEG_SPOP_SBC_1
0.1667
p.R1914H
DO38404
STAD
ICGC
PNTST
DEG_SPOP_SBC_1
0.1667
p.R1914H
DO43306
UCEC
ICGC
PNTST
DEG_SPOP_SBC_1
0.1667
p.R1912C
TCGA-AX-A1CE
UCEC
TCGA
PNTST
DEG_SPOP_SBC_1
0.2222
p.R1912C
DO42280
UCEC
ICGC
PNTST
DEG_SPOP_SBC_1
0.2222
p.R1914C
TCGA-D1-A16F
UCEC
TCGA
PNTST
DEG_SPOP_SBC_1
0.1667
p.R1914C
DO42408
UCEC
ICGC
PNTST
DEG_SPOP_SBC_1
0.1667
p.S1907L
TCGA-EB-A4XL
SKCM
TCGA
PNTST
DEG_SPOP_SBC_1
0.7667
p.S1907L
DO47401
SKCM
ICGC
PNTST
DEG_SPOP_SBC_1
0.7667
Drug responses associated with CHD7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PNTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86Z02
Homeodomain-interacting protein kinase 1
DEG_SPOP_SBC_1
565:569
PNTST
SPOP
0.5677
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12823:12827
PNTST
SPOP
0.6675
More...
Q9P2D1
Chromodomain-helicase-DNA-binding protein 7
DEG_SPOP_SBC_1
1904:1908
PNTST
SPOP
0.8978
More...