DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PPTPPSS
Uniprot ID:
Q96QT6
Source protein:
PHD finger protein 12
Source gene:
PHF12
Class:
DEG_SCF_FBW7_1
Location:
878:884
E3 ligase:
FBXW7
DEGRON score:
0.8927
ASA_SCORE:
79.8429
COIL:
0.84
CONS_SCORE:
0.3613
DSS_SCORE:
0.5339
HELIX:
0.1493
FCONS_SCORE:
0.7712
RIG_SCORE:
0.6438
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R894S
TCGA-64-5781
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.R894S
DO23740
LUAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.E875D
TCGA-B5-A0JY
UCEC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.E875D
DO43041
UCEC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.E875D
SIDM01726
Ewing's Sarcoma
GDSC
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.I885S
TCGA-B5-A11E
UCEC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.I885S
DO41644
UCEC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.I885F
TCGA-BP-4985
KIRC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.I885F
DO20693
KIRC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.S870A
TCGA-EO-A22X
UCEC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1111
p.S870A
DO43907
UCEC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1111
p.S891T
DO48232
ESCA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1389
Drug responses associated with PHF12 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTPPSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14686
Histone-lysine N-methyltransferase 2D
DEG_SCF_FBW7_1
4619:4625
PPTPPSS
FBXW7
0.9983
More...
Q96QT6
PHD finger protein 12
DEG_SCF_FBW7_1
878:884
PPTPPSS
FBXW7
0.8927
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SCF_FBW7_1
497:503
PPTPPSS
FBXW7
0.8747
More...