DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PPTPPSS
Uniprot ID:
Q9NZP6
Source protein:
Nuclear pore-associated protein 1
Source gene:
NPAP1
Class:
DEG_SCF_FBW7_1
Location:
497:503
E3 ligase:
FBXW7
DEGRON score:
0.8747
ASA_SCORE:
85.6143
COIL:
0.9753
CONS_SCORE:
0.6206
DSS_SCORE:
0.6617
HELIX:
0.0097
FCONS_SCORE:
0.9389
RIG_SCORE:
0.5244
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P509H
TCGA-17-Z028
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.P509H
TCGA-AX-A2HD
UCEC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.P509H
DO42608
UCEC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.R513T
TCGA-17-Z056
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.V488I
TCGA-22-4594
LUSC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.V488I
TCGA-AG-A015
READ
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.V488I
TCGA-AG-A01Y
READ
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.V488I
DO27476
LUSC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.V488I
DO37396
READ
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.F507I
TCGA-29-2434
OV
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.2222
p.F507I
DO31360
OV
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.2222
p.S495Y
TCGA-2F-A9KO
BLCA
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.2778
p.S495Y
DO51859
BLCA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.2778
p.R513K
TCGA-3N-A9WC
SKCM
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.R513K
DO51234
SKCM
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.G489E
TCGA-44-A479
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1111
p.G489E
DO23633
LUAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1111
p.V488L
TCGA-73-A9RS
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.V488L
DO51193
LUAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.A491V
TCGA-AA-A01Z
COAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491V
DO8392
COAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.P500R
TCGA-BB-A5HY
HNSC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.7512
p.P500R
DO218979
HNSC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.7512
p.L493H
TCGA-BR-4184
STAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.2222
p.L493H
DO38328
STAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.2222
p.P501R
TCGA-BR-A4QI
STAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.6401
p.P501R
DO38523
STAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.6401
p.D496Y
TCGA-CV-7245
HNSC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.D496Y
DO14322
HNSC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.T512A
TCGA-DU-6392
LGG
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.T512A
DO22237
LGG
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0833
p.D496E
TCGA-HR-A5NC
SKCM
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.D496E
DO51265
SKCM
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.A490S
TCGA-IB-7651
PAAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1389
p.A490S
DO46657
PAAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1389
p.V487F
TCGA-K4-A3WS
BLCA
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.V487F
DO480
BLCA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.0556
p.A491S
TCGA-MP-A4SV
LUAD
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491S
DO45339
LUAD
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491S
SIDM00049
Colorectal Carcinoma
GDSC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491S
ACH-002233
Colon/Colorectal Cancer
CCLE
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491S
DIFI
large_intestine
COSMIC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A490T
TCGA-UF-A71B
HNSC
TCGA
PPTPPSS
DEG_SCF_FBW7_1
0.1389
p.A490T
DO52107
HNSC
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1389
p.S503F
DO48244
ESCA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.7982
p.S503F
SIDM01735
Biliary Tract Carcinoma
GDSC
PPTPPSS
DEG_SCF_FBW7_1
0.7982
p.S503T
DO233761
GACA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.6005
p.V511F
DO228976
LICA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.1111
p.P505T
DO228983
LICA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.2778
p.D496G
DO49189
PACA
ICGC
PPTPPSS
DEG_SCF_FBW7_1
0.3056
p.S506F
SIDM01027
Esophageal Squamous Cell Carcinoma
GDSC
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.S506F
ACH-000865
Esophageal Cancer
CCLE
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.S506F
KYSE-450
oesophagus
COSMIC
PPTPPSS
DEG_SCF_FBW7_1
0.25
p.A491T
SIDM00749
Non-Small Cell Lung Carcinoma
GDSC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491T
ACH-000916
Lung Cancer
CCLE
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.A491T
NCI-H1573
lung
COSMIC
PPTPPSS
DEG_SCF_FBW7_1
0.1667
p.V487D
ACH-001413
Bladder Cancer
CCLE
PPTPPSS
DEG_SCF_FBW7_1
0.0556
Drug responses associated with NPAP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTPPSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14686
Histone-lysine N-methyltransferase 2D
DEG_SCF_FBW7_1
4619:4625
PPTPPSS
FBXW7
0.9983
More...
Q96QT6
PHD finger protein 12
DEG_SCF_FBW7_1
878:884
PPTPPSS
FBXW7
0.8927
More...
Q9NZP6
Nuclear pore-associated protein 1
DEG_SCF_FBW7_1
497:503
PPTPPSS
FBXW7
0.8747
More...