DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPAPT
Uniprot ID:
O00330
Source protein:
Pyruvate dehydrogenase protein X component, mitochondrial
Source gene:
PDHX
Class:
DEG_SCF_FBW7_1
Location:
233:238
E3 ligase:
FBXW7
DEGRON score:
0.9254
ASA_SCORE:
90.55
COIL:
0.9622
CONS_SCORE:
0.2811
DSS_SCORE:
0.7419
HELIX:
0.0125
FCONS_SCORE:
1.0465
RIG_SCORE:
0.6005
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T229N
TCGA-17-Z031
LUAD
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.2222
p.T225K
TCGA-24-1417
OV
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.1111
p.E230K
TCGA-CR-7364
HNSC
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.25
p.K227R
TCGA-HU-A4GH
STAD
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.T238I
TCGA-JW-A5VL
CESC
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.7078
p.T223I
DO49976
CESC
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.5
p.R242W
DO10244
COAD
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.2222
p.R242W
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.2222
p.P243H
DO230323
COCA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.T225I
DO234407
ESAD
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1111
p.R242Q
DO233101
GACA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.2222
p.P246L
DO15903
HNSC
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1111
p.A234S
DO229038
LICA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.7588
p.P243S
DO27088
LUSC
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P241S
DO220882
MELA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.25
p.T223P
DO219881
SKCA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.5
p.K227Q
SIDM00547
Non-Small Cell Lung Carcinoma
GDSC
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.K227Q
ACH-000438
Lung Cancer
CCLE
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.K227Q
LU-65
lung
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.S245L
SIDM01608
Endometrial Carcinoma
GDSC
PTPAPT
DEG_SCF_FBW7_1
0.1389
p.P237T
SIDM01592
Breast Carcinoma
GDSC
PTPAPT
DEG_SCF_FBW7_1
0.5919
p.R242L
CML-T1
haematopoietic_and_lymphoid_tissue
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.2222
p.V248A
AN3-CA
endometrium
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.0556
p.K233N
DB
haematopoietic_and_lymphoid_tissue
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.6918
p.P243L
SNU-1040
large_intestine
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.1944
Drug responses associated with PDHX mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPAPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00330
Pyruvate dehydrogenase protein X component, mitochondrial
DEG_SCF_FBW7_1
233:238
PTPAPT
FBXW7
0.9254
More...
Q03014
Hematopoietically-expressed homeobox protein HHEX
DEG_SCF_FBW7_1
45:50
PTPAPT
FBXW7
0.9307
More...
Q6ZNJ1
Neurobeachin-like protein 2
DEG_SCF_FBW7_1
618:623
PTPAPT
FBXW7
0.8692
More...