DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPAPT
Uniprot ID:
Q6ZNJ1
Source protein:
Neurobeachin-like protein 2
Source gene:
NBEAL2
Class:
DEG_SCF_FBW7_1
Location:
618:623
E3 ligase:
FBXW7
DEGRON score:
0.8692
ASA_SCORE:
81.6667
COIL:
0.9385
CONS_SCORE:
0.2515
DSS_SCORE:
0.4991
HELIX:
0.0203
FCONS_SCORE:
0.838
RIG_SCORE:
0.7235
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A617V
TCGA-22-1016
LUSC
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.3056
p.A617V
DO26971
LUSC
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.3056
p.H612R
TCGA-AP-A1DK
UCEC
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.1667
p.H612R
DO42033
UCEC
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1667
p.H612R
ACH-002179
Breast Cancer
CCLE
PTPAPT
DEG_SCF_FBW7_1
0.1667
p.H612R
OCUB-M
breast
COSMIC
PTPAPT
DEG_SCF_FBW7_1
0.1667
p.P613H
TCGA-BF-A1PU
SKCM
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P613H
TCGA-FS-A1ZG
SKCM
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P613H
DO37523
SKCM
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P613H
DO50278
SKCM
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.A617T
TCGA-BR-6452
STAD
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.3056
p.A617T
DO38404
STAD
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.3056
p.T619A
TCGA-C5-A7CG
CESC
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.7139
p.P625L
TCGA-D9-A6EC
SKCM
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.P625L
DO50291
SKCM
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.2778
p.P613L
TCGA-DU-6392
LGG
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P613L
DO22237
LGG
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.1944
p.P620H
TCGA-FS-A1ZJ
SKCM
TCGA
PTPAPT
DEG_SCF_FBW7_1
0.7694
p.T619I
DO225280
BRCA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.7078
p.K618R
DO8682
COAD
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.7237
p.R624Q
DO233764
GACA
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.3056
p.R633C
DO44575
LGG
ICGC
PTPAPT
DEG_SCF_FBW7_1
0.0556
Drug responses associated with NBEAL2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPAPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00330
Pyruvate dehydrogenase protein X component, mitochondrial
DEG_SCF_FBW7_1
233:238
PTPAPT
FBXW7
0.9254
More...
Q03014
Hematopoietically-expressed homeobox protein HHEX
DEG_SCF_FBW7_1
45:50
PTPAPT
FBXW7
0.9307
More...
Q6ZNJ1
Neurobeachin-like protein 2
DEG_SCF_FBW7_1
618:623
PTPAPT
FBXW7
0.8692
More...