DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPVTS
Uniprot ID:
Q01196
Source protein:
Runt-related transcription factor 1
Source gene:
RUNX1
Class:
DEG_SCF_FBW7_1
Location:
330:335
E3 ligase:
FBXW7
DEGRON score:
0.9977
ASA_SCORE:
62.5667
COIL:
0.9135
CONS_SCORE:
0.4033
DSS_SCORE:
0.3032
HELIX:
0.0257
FCONS_SCORE:
1.065
RIG_SCORE:
0.7196
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T323M
TCGA-DI-A1BU
UCEC
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.T323M
DO42023
UCEC
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.R334H
TCGA-S9-A6TS
LGG
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.8244
p.R334H
DO50181
LGG
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.8244
p.D344N
DO233791
GACA
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.0833
p.R334S
DO229036
LICA
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.7427
p.Q335H
SIDM00377
Other Sarcomas
GDSC
PTPVTS
DEG_SCF_FBW7_1
0.7582
p.S342L
ACH-000223
Breast Cancer
CCLE
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.Q335L
ACH-000851
Lung Cancer
CCLE
PTPVTS
DEG_SCF_FBW7_1
0.7765
p.M341V
ACH-000919
Gastric Cancer
CCLE
PTPVTS
DEG_SCF_FBW7_1
0.1667
Drug responses associated with RUNX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPVTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q01196
Runt-related transcription factor 1
DEG_SCF_FBW7_1
330:335
PTPVTS
FBXW7
0.9977
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SCF_FBW7_1
908:913
PTPVTS
FBXW7
0.9937
More...
Q7Z6Z7
E3 ubiquitin-protein ligase HUWE1
DEG_SCF_FBW7_1
3508:3513
PTPVTS
FBXW7
0.7023
More...