DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPVTS
Uniprot ID:
Q15652
Source protein:
Probable JmjC domain-containing histone demethylation protein 2C
Source gene:
JMJD1C
Class:
DEG_SCF_FBW7_1
Location:
908:913
E3 ligase:
FBXW7
DEGRON score:
0.9937
ASA_SCORE:
79.9833
COIL:
0.9397
CONS_SCORE:
0.3873
DSS_SCORE:
0.5184
HELIX:
0.0283
FCONS_SCORE:
1.0566
RIG_SCORE:
0.6717
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D915E
TCGA-2Z-A9J5
KIRP
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.2778
p.S921C
TCGA-44-6778
LUAD
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.1111
p.S900Y
TCGA-AP-A1DV
UCEC
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.1111
p.S900Y
TCGA-AX-A06F
UCEC
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.1111
p.W904C
TCGA-DK-AA6R
BLCA
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.2222
p.W904R
TCGA-G7-6790
KIRP
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.2222
p.L920F
TCGA-H7-A6C4
HNSC
TCGA
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.A908E
DO229006
LICA
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.7701
p.Q915K
DO25320
LUAD
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.2778
p.A909V
DO36542
READ
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.6936
p.S923Y
DO41109
UCEC
ICGC
PTPVTS
DEG_SCF_FBW7_1
0.0556
p.P901S
SIDM00545
Melanoma
GDSC
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.P901S
ACH-000987
Skin Cancer
CCLE
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.P901S
Mewo
skin
COSMIC
PTPVTS
DEG_SCF_FBW7_1
0.1389
p.S902C
ACH-000982
Colon/Colorectal Cancer
CCLE
PTPVTS
DEG_SCF_FBW7_1
0.1667
Drug responses associated with JMJD1C mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPVTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q01196
Runt-related transcription factor 1
DEG_SCF_FBW7_1
330:335
PTPVTS
FBXW7
0.9977
More...
Q15652
Probable JmjC domain-containing histone demethylation protein 2C
DEG_SCF_FBW7_1
908:913
PTPVTS
FBXW7
0.9937
More...
Q7Z6Z7
E3 ubiquitin-protein ligase HUWE1
DEG_SCF_FBW7_1
3508:3513
PTPVTS
FBXW7
0.7023
More...