DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENE
Uniprot ID:
Q8IZH2
Source protein:
5'-3' exoribonuclease 1
Source gene:
XRN1
Class:
DEG_APCC_KENBOX_2
Location:
1328:1332
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9861
ASA_SCORE:
112.34
COIL:
0.7964
CONS_SCORE:
0.2639
DSS_SCORE:
0.6179
HELIX:
0.1966
FCONS_SCORE:
1.0657
RIG_SCORE:
0.6333
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1323T
TCGA-10-0931
OV
TCGA
SKENE
DEG_APCC_KENBOX_2
0.1944
p.A1323T
DO28631
OV
ICGC
SKENE
DEG_APCC_KENBOX_2
0.1944
p.L1322V
TCGA-19-5956
GBM
TCGA
SKENE
DEG_APCC_KENBOX_2
0.1667
p.L1322V
DO13863
GBM
ICGC
SKENE
DEG_APCC_KENBOX_2
0.1667
p.I1327V
TCGA-5M-AAT6
COAD
TCGA
SKENE
DEG_APCC_KENBOX_2
0.3056
p.I1327V
DO223703
COAD
ICGC
SKENE
DEG_APCC_KENBOX_2
0.3056
p.H1338Y
TCGA-A5-A0G2
UCEC
TCGA
SKENE
DEG_APCC_KENBOX_2
0.1667
p.H1338Y
DO41235
UCEC
ICGC
SKENE
DEG_APCC_KENBOX_2
0.1667
p.E1330A
SIDM01198
Burkitt's Lymphoma
GDSC
SKENE
DEG_APCC_KENBOX_2
0.7701
p.E1330A
SIDM00180
Kidney Carcinoma
GDSC
SKENE
DEG_APCC_KENBOX_2
0.7701
p.E1330A
SIDM01645
Non-Cancerous
GDSC
SKENE
DEG_APCC_KENBOX_2
0.7701
p.V1333A
SIDM01045
Endometrial Carcinoma
GDSC
SKENE
DEG_APCC_KENBOX_2
0.3056
p.V1333A
ACH-000978
Endometrial/Uterine Cancer
CCLE
SKENE
DEG_APCC_KENBOX_2
0.3056
p.V1333A
EN
endometrium
COSMIC
SKENE
DEG_APCC_KENBOX_2
0.3056
Drug responses associated with XRN1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IZH2
5'-3' exoribonuclease 1
DEG_APCC_KENBOX_2
1328:1332
SKENE
APC,CDC20,FZR1
0.9861
More...
Q9Y6X8
Zinc fingers and homeoboxes protein 2
DEG_APCC_KENBOX_2
55:59
SKENE
APC,CDC20,FZR1
0.7935
More...
Q6P6B1
Glutamate-rich protein 5
DEG_APCC_KENBOX_2
222:226
SKENE
APC,CDC20,FZR1
0.993
More...