DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENQ
Uniprot ID:
P25054
Source protein:
Adenomatous polyposis coli protein
Source gene:
APC
Class:
DEG_APCC_KENBOX_2
Location:
2601:2605
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9747
ASA_SCORE:
114.32
COIL:
0.8968
CONS_SCORE:
0.3402
DSS_SCORE:
0.5815
HELIX:
0.0532
FCONS_SCORE:
0.8692
RIG_SCORE:
0.6569
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S2601R
TCGA-AB-2827
LAML
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.6316
p.S2601R
DO22032
LAML
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.6316
p.R2613I
TCGA-AJ-A3EL
UCEC
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.1111
p.R2613I
DO41542
UCEC
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.1111
p.S2596A
SIDM00057
Neuroblastoma
GDSC
SKENQ
DEG_APCC_KENBOX_2
0.1944
p.S2596A
ACH-000676
Brain Cancer
CCLE
SKENQ
DEG_APCC_KENBOX_2
0.1944
p.S2596A
ACH-002389
Neuroblastoma
CCLE
SKENQ
DEG_APCC_KENBOX_2
0.1944
p.S2596A
ACN
autonomic_ganglia
COSMIC
SKENQ
DEG_APCC_KENBOX_2
0.1944
p.A2608T
SIDM01588
Endometrial Carcinoma
GDSC
SKENQ
DEG_APCC_KENBOX_2
0.25
p.A2608T
ACH-000993
Endometrial/Uterine Cancer
CCLE
SKENQ
DEG_APCC_KENBOX_2
0.25
Drug responses associated with APC mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENQ
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P25054
Adenomatous polyposis coli protein
DEG_APCC_KENBOX_2
2601:2605
SKENQ
APC,CDC20,FZR1
0.9747
More...
Q12834
Cell division cycle protein 20 homolog
DEG_APCC_KENBOX_2
96:100
SKENQ
APC,CDC20,FZR1
0.985
More...
Q13683
Integrin alpha-7 [Cleaved into: Integrin alpha-7 heavy chain; Integrin alpha-7 light chain; Integrin alpha-7 70 kDa form]
DEG_APCC_KENBOX_2
118:122
SKENQ
APC,CDC20,FZR1
0.9673
More...