DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
SKENQ
Uniprot ID:
Q13683
Source protein:
Integrin alpha-7 [Cleaved into: Integrin alpha-7 heavy chain; Integrin alpha-7 light chain; Integrin alpha-7 70 kDa form]
Source gene:
ITGA7
Class:
DEG_APCC_KENBOX_2
Location:
118:122
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9673
ASA_SCORE:
78.84
COIL:
0.8334
CONS_SCORE:
0.5048
DSS_SCORE:
0.482
HELIX:
0.0348
FCONS_SCORE:
1.2012
RIG_SCORE:
0.7631
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R129W
TCGA-A8-A094
BRCA
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129W
TCGA-ER-A193
SKCM
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129W
TCGA-FW-A3R5
SKCM
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129W
DO2593
BRCA
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129W
DO37406
SKCM
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129W
DO47368
SKCM
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.E120D
TCGA-CA-6717
COAD
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.6758
p.E120D
DO8264
COAD
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.6758
p.D109N
TCGA-DK-A6AW
BLCA
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.0833
p.D109N
TCGA-EO-A22R
UCEC
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.0833
p.D109N
DO48566
BLCA
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.0833
p.D109N
DO42713
UCEC
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.0833
p.R129L
TCGA-EO-A22X
UCEC
TCGA
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.R129L
DO43907
UCEC
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.1389
p.S118C
DO234276
ESAD
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.643
p.E117G
DO234276
ESAD
ICGC
SKENQ
DEG_APCC_KENBOX_2
0.3056
p.M114V
SIDM01090
Colorectal Carcinoma
GDSC
SKENQ
DEG_APCC_KENBOX_2
0.2222
p.Y114H
SNU-C5
large_intestine
COSMIC
SKENQ
DEG_APCC_KENBOX_2
0.2222
p.E132K
HGC-27
stomach
COSMIC
SKENQ
DEG_APCC_KENBOX_2
0.0556
p.H113N
FADU
upper_aerodigestive_tract
COSMIC
SKENQ
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with ITGA7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of SKENQ
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P25054
Adenomatous polyposis coli protein
DEG_APCC_KENBOX_2
2601:2605
SKENQ
APC,CDC20,FZR1
0.9747
More...
Q12834
Cell division cycle protein 20 homolog
DEG_APCC_KENBOX_2
96:100
SKENQ
APC,CDC20,FZR1
0.985
More...
Q13683
Integrin alpha-7 [Cleaved into: Integrin alpha-7 heavy chain; Integrin alpha-7 light chain; Integrin alpha-7 70 kDa form]
DEG_APCC_KENBOX_2
118:122
SKENQ
APC,CDC20,FZR1
0.9673
More...