DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VHSTS
Uniprot ID:
O14513
Source protein:
Nck-associated protein 5
Source gene:
NCKAP5
Class:
DEG_SPOP_SBC_1
Location:
1788:1792
E3 ligase:
SPOP
DEGRON score:
0.991
ASA_SCORE:
73.46
COIL:
0.8272
CONS_SCORE:
0.6
DSS_SCORE:
0.6622
HELIX:
0.0282
FCONS_SCORE:
1.1
RIG_SCORE:
0.6852
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I1787T
TCGA-22-4613
LUSC
TCGA
VHSTS
DEG_SPOP_SBC_1
0.3056
p.I1787T
DO26468
LUSC
ICGC
VHSTS
DEG_SPOP_SBC_1
0.3056
p.S1785R
TCGA-55-6972
LUAD
TCGA
VHSTS
DEG_SPOP_SBC_1
0.25
p.S1785R
DO25010
LUAD
ICGC
VHSTS
DEG_SPOP_SBC_1
0.25
p.D1784V
TCGA-90-7769
LUSC
TCGA
VHSTS
DEG_SPOP_SBC_1
0.2222
p.D1784V
DO26822
LUSC
ICGC
VHSTS
DEG_SPOP_SBC_1
0.2222
p.H1789Q
TCGA-A5-A1OF
UCEC
TCGA
VHSTS
DEG_SPOP_SBC_1
0.647
p.H1789Q
DO42568
UCEC
ICGC
VHSTS
DEG_SPOP_SBC_1
0.647
p.M1801I
TCGA-DA-A960
SKCM
TCGA
VHSTS
DEG_SPOP_SBC_1
0.0833
p.M1801I
DO219482
SKCM
ICGC
VHSTS
DEG_SPOP_SBC_1
0.0833
p.P1782R
TCGA-DU-6396
LGG
TCGA
VHSTS
DEG_SPOP_SBC_1
0.1667
p.P1782R
DO22143
LGG
ICGC
VHSTS
DEG_SPOP_SBC_1
0.1667
p.P1794S
TCGA-FR-A726
SKCM
TCGA
VHSTS
DEG_SPOP_SBC_1
0.2778
p.P1794S
DO48665
SKCM
ICGC
VHSTS
DEG_SPOP_SBC_1
0.2778
p.R1802K
TCGA-FW-A3R5
SKCM
TCGA
VHSTS
DEG_SPOP_SBC_1
0.0556
p.R1802K
DO37406
SKCM
ICGC
VHSTS
DEG_SPOP_SBC_1
0.0556
p.R1802K
SIDM00007
Other Solid Cancers
GDSC
VHSTS
DEG_SPOP_SBC_1
0.0556
p.R1802K
ACH-001550
Skin Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.0556
p.R1802K
MCC13
skin
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.0556
p.D1778A
TCGA-L5-A43J
ESCA
TCGA
VHSTS
DEG_SPOP_SBC_1
0.0556
p.T1797I
DO231690
LINC
ICGC
VHSTS
DEG_SPOP_SBC_1
0.1944
p.A1783E
DO50415
PRAD
ICGC
VHSTS
DEG_SPOP_SBC_1
0.1944
p.G1779S
SIDM01295
Pancreatic Carcinoma
GDSC
VHSTS
DEG_SPOP_SBC_1
0.0833
p.R1781H
SIDM00596
Endometrial Carcinoma
GDSC
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
SIDM00487
Colorectal Carcinoma
GDSC
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
ACH-000941
Endometrial/Uterine Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
ACH-000954
Endometrial/Uterine Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
ACH-000963
Colon/Colorectal Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
ACH-001517
Endometrial/Uterine Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
ACH-001991
Primary
CCLE
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
CCK-81
large_intestine
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.1389
p.R1781H
HEC-1
endometrium
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.1389
p.D1793A
ACH-000894
Lung Cancer
CCLE
VHSTS
DEG_SPOP_SBC_1
0.3056
p.D1793A
NCI-H1869
lung
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with NCKAP5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VHSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1660:1664
VHSTS
SPOP
0.9899
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
1555:1559
VHSTS
SPOP
0.989
More...
O14513
Nck-associated protein 5
DEG_SPOP_SBC_1
1788:1792
VHSTS
SPOP
0.991
More...