DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VHSTS
Uniprot ID:
Q9UPQ9
Source protein:
Trinucleotide repeat-containing gene 6B protein
Source gene:
TNRC6B
Class:
DEG_SPOP_SBC_1
Location:
1555:1559
E3 ligase:
SPOP
DEGRON score:
0.989
ASA_SCORE:
71.96
COIL:
0.8278
CONS_SCORE:
0.3503
DSS_SCORE:
0.3735
HELIX:
0.1142
FCONS_SCORE:
0.7819
RIG_SCORE:
0.7031
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1546R
TCGA-AN-A04D
BRCA
TCGA
VHSTS
DEG_SPOP_SBC_1
0.0833
p.A1547S
TCGA-CC-A7IH
LIHC
TCGA
VHSTS
DEG_SPOP_SBC_1
0.1111
p.A1547S
DO52181
LIHC
ICGC
VHSTS
DEG_SPOP_SBC_1
0.1111
p.F1562L
TCGA-EE-A3AH
SKCM
TCGA
VHSTS
DEG_SPOP_SBC_1
0.25
p.F1562L
DO222635
MELA
ICGC
VHSTS
DEG_SPOP_SBC_1
0.25
p.F1562L
DO37443
SKCM
ICGC
VHSTS
DEG_SPOP_SBC_1
0.25
p.Y1565H
SIDM00321
Ovarian Carcinoma
GDSC
VHSTS
DEG_SPOP_SBC_1
0.1667
p.Y1565H
TYK-nu
ovary
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.1667
p.S1551C
SIDM01175
Other Sarcomas
GDSC
VHSTS
DEG_SPOP_SBC_1
0.2222
p.S1551C
SW684
soft_tissue
COSMIC
VHSTS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with TNRC6B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VHSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TCU4
Alstrom syndrome protein 1
DEG_SPOP_SBC_1
1660:1664
VHSTS
SPOP
0.9899
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
1555:1559
VHSTS
SPOP
0.989
More...
O14513
Nck-associated protein 5
DEG_SPOP_SBC_1
1788:1792
VHSTS
SPOP
0.991
More...