DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VKENK
Uniprot ID:
O75420
Source protein:
GRB10-interacting GYF protein 1
Source gene:
GIGYF1
Class:
DEG_APCC_KENBOX_2
Location:
51:55
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9245
ASA_SCORE:
106.48
COIL:
0.861
CONS_SCORE:
0.3117
DSS_SCORE:
0.3529
HELIX:
0.088
FCONS_SCORE:
0.7494
RIG_SCORE:
0.8096
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E59Q
TCGA-2Y-A9GW
LIHC
TCGA
VKENK
DEG_APCC_KENBOX_2
0.2222
p.E59Q
DO219511
LIHC
ICGC
VKENK
DEG_APCC_KENBOX_2
0.2222
p.E53D
TCGA-AA-3855
COAD
TCGA
VKENK
DEG_APCC_KENBOX_2
0.6758
p.E53D
DO10742
COAD
ICGC
VKENK
DEG_APCC_KENBOX_2
0.6758
p.N54S
TCGA-AP-A0LM
UCEC
TCGA
VKENK
DEG_APCC_KENBOX_2
0.7069
p.N54S
DO43306
UCEC
ICGC
VKENK
DEG_APCC_KENBOX_2
0.7069
p.E64K
TCGA-D1-A101
UCEC
TCGA
VKENK
DEG_APCC_KENBOX_2
0.0833
p.E64K
DO43955
UCEC
ICGC
VKENK
DEG_APCC_KENBOX_2
0.0833
p.V51I
TCGA-FI-A2EX
UCEC
TCGA
VKENK
DEG_APCC_KENBOX_2
0.5965
p.V51I
DO42352
UCEC
ICGC
VKENK
DEG_APCC_KENBOX_2
0.5965
p.LY49LH
DO220903
MELA
ICGC
VKENK
DEG_APCC_KENBOX_2
0
p.Y50H
DO220903
MELA
ICGC
VKENK
DEG_APCC_KENBOX_2
0.3056
p.L49V
DO46420
OV
ICGC
VKENK
DEG_APCC_KENBOX_2
0.2778
p.E44K
DO33224
PACA
ICGC
VKENK
DEG_APCC_KENBOX_2
0.1389
p.M46I
SIDM01280
Esophageal Carcinoma
GDSC
VKENK
DEG_APCC_KENBOX_2
0.1944
p.E59K
ACH-000279
Bone Cancer
CCLE
VKENK
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with GIGYF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKENK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14966
Ras-related protein Rab-7L1
DEG_APCC_KENBOX_2
156:160
VKENK
APC,CDC20,FZR1
0.8907
More...
O75420
GRB10-interacting GYF protein 1
DEG_APCC_KENBOX_2
51:55
VKENK
APC,CDC20,FZR1
0.9245
More...
P63128
Endogenous retrovirus group K member 9 Pol protein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.525
More...
P62684
Endogenous retrovirus group K member 113 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9925
More...
P63126
Endogenous retrovirus group K member 9 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.854
More...
P63130
Endogenous retrovirus group K member 7 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9428
More...
P63145
Endogenous retrovirus group K member 24 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.8705
More...
P87889
Endogenous retrovirus group K member 10 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9753
More...
Q7LDI9
Endogenous retrovirus group K member 6 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.8189
More...
Q9HDB9
Endogenous retrovirus group K member 5 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9912
More...
Q9YNA8
Endogenous retrovirus group K member 19 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9866
More...
P62683
Endogenous retrovirus group K member 21 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.8826
More...
P62685
Endogenous retrovirus group K member 8 Gag polyprotein
DEG_APCC_KENBOX_2
199:203
VKENK
APC,CDC20,FZR1
0.9243
More...
Q9BXX2
Ankyrin repeat domain-containing protein 30B
DEG_APCC_KENBOX_2
1107:1111
VKENK
APC,CDC20,FZR1
0.9176
More...