DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKENT
Uniprot ID:
Q68CZ1
Source protein:
Protein fantom
Source gene:
RPGRIP1L
Class:
DEG_APCC_KENBOX_2
Location:
1030:1034
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5377
ASA_SCORE:
88.14
COIL:
0.4732
CONS_SCORE:
0.6945
DSS_SCORE:
0.6789
HELIX:
0.4926
FCONS_SCORE:
1.0418
RIG_SCORE:
0.7314
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E1032Q
TCGA-4Z-AA80
BLCA
TCGA
VKENT
DEG_APCC_KENBOX_2
0.6744
p.E1032Q
DO218986
BLCA
ICGC
VKENT
DEG_APCC_KENBOX_2
0.6744
p.E1035D
TCGA-66-2773
LUSC
TCGA
VKENT
DEG_APCC_KENBOX_2
0.3056
p.E1035D
DO26536
LUSC
ICGC
VKENT
DEG_APCC_KENBOX_2
0.3056
p.E1032K
TCGA-VS-A9UZ
CESC
TCGA
VKENT
DEG_APCC_KENBOX_2
0.7022
p.E1032K
DO51646
CESC
ICGC
VKENT
DEG_APCC_KENBOX_2
0.7022
p.G1025S
DO229016
COCA
ICGC
VKENT
DEG_APCC_KENBOX_2
0.1944
p.G1025S
DO229489
LAML
ICGC
VKENT
DEG_APCC_KENBOX_2
0.1944
p.G1025S
DO229505
LAML
ICGC
VKENT
DEG_APCC_KENBOX_2
0.1944
p.G1025S
DO228947
LICA
ICGC
VKENT
DEG_APCC_KENBOX_2
0.1944
p.G1025S
DO229047
LICA
ICGC
VKENT
DEG_APCC_KENBOX_2
0.1944
p.Q1038K
DO229029
LICA
ICGC
VKENT
DEG_APCC_KENBOX_2
0.2222
p.T1034A
SIDM01146
Gastric Carcinoma
GDSC
VKENT
DEG_APCC_KENBOX_2
0.6028
p.T1034A
NCI-SNU-1
stomach
COSMIC
VKENT
DEG_APCC_KENBOX_2
0.6028
p.S1026F
ACH-001536
Bile Duct Cancer
CCLE
VKENT
DEG_APCC_KENBOX_2
0.2222
p.E1034G
ACH-001838
Bile Duct Cancer
CCLE
VKENT
DEG_APCC_KENBOX_2
0.7199
Drug responses associated with RPGRIP1L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKENT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q68CZ1
Protein fantom
DEG_APCC_KENBOX_2
1030:1034
VKENT
APC,CDC20,FZR1
0.5377
More...
Q9BX40
Protein LSM14 homolog B
DEG_APCC_KENBOX_2
242:246
VKENT
APC,CDC20,FZR1
0.5991
More...
Q9H2X6
Homeodomain-interacting protein kinase 2
DEG_APCC_KENBOX_2
834:838
VKENT
APC,CDC20,FZR1
0.9934
More...