DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VKENT
Uniprot ID:
Q9BX40
Source protein:
Protein LSM14 homolog B
Source gene:
LSM14B
Class:
DEG_APCC_KENBOX_2
Location:
242:246
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5991
ASA_SCORE:
94.34
COIL:
0.8352
CONS_SCORE:
0.2686
DSS_SCORE:
0.5979
HELIX:
0.0892
FCONS_SCORE:
0.5897
RIG_SCORE:
0.7076
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R238H
TCGA-D1-A103
UCEC
TCGA
VKENT
DEG_APCC_KENBOX_2
0.2222
p.R238H
DO42312
UCEC
ICGC
VKENT
DEG_APCC_KENBOX_2
0.2222
p.R238H
ACH-000702
Lymphoma
CCLE
VKENT
DEG_APCC_KENBOX_2
0.2222
p.I247T
TCGA-UZ-A9PX
KIRP
TCGA
VKENT
DEG_APCC_KENBOX_2
0.3056
p.I247T
DO219712
KIRP
ICGC
VKENT
DEG_APCC_KENBOX_2
0.3056
p.N241K
SIDM00584
Osteosarcoma
GDSC
VKENT
DEG_APCC_KENBOX_2
0.3056
p.N241K
ACH-002142
Bone Cancer
CCLE
VKENT
DEG_APCC_KENBOX_2
0.3056
p.N241K
HuO-3N1
bone
COSMIC
VKENT
DEG_APCC_KENBOX_2
0.3056
p.V242I
SIDM00210
Ovarian Carcinoma
GDSC
VKENT
DEG_APCC_KENBOX_2
0.5965
p.V242I
ACH-000657
Ovarian Cancer
CCLE
VKENT
DEG_APCC_KENBOX_2
0.5965
p.V242I
A2780
ovary
COSMIC
VKENT
DEG_APCC_KENBOX_2
0.5965
Drug responses associated with LSM14B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKENT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q68CZ1
Protein fantom
DEG_APCC_KENBOX_2
1030:1034
VKENT
APC,CDC20,FZR1
0.5377
More...
Q9BX40
Protein LSM14 homolog B
DEG_APCC_KENBOX_2
242:246
VKENT
APC,CDC20,FZR1
0.5991
More...
Q9H2X6
Homeodomain-interacting protein kinase 2
DEG_APCC_KENBOX_2
834:838
VKENT
APC,CDC20,FZR1
0.9934
More...