DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKSTT
Uniprot ID:
Q8NHM5
Source protein:
Lysine-specific demethylase 2B
Source gene:
KDM2B
Class:
DEG_SPOP_SBC_1
Location:
481:485
E3 ligase:
SPOP
DEGRON score:
0.9987
ASA_SCORE:
78.94
COIL:
0.7002
CONS_SCORE:
0.3006
DSS_SCORE:
0.4958
HELIX:
0.2152
FCONS_SCORE:
1.0082
RIG_SCORE:
0.7242
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R471K
TCGA-AX-A0J1
UCEC
TCGA
VKSTT
DEG_SPOP_SBC_1
0.0556
p.R471K
DO41199
UCEC
ICGC
VKSTT
DEG_SPOP_SBC_1
0.0556
p.S474F
TCGA-H7-A76A
HNSC
TCGA
VKSTT
DEG_SPOP_SBC_1
0.5833
p.S474F
DO52088
HNSC
ICGC
VKSTT
DEG_SPOP_SBC_1
0.5833
p.S483F
DO220886
MELA
ICGC
VKSTT
DEG_SPOP_SBC_1
0.7982
p.S480P
GP5d
large_intestine
COSMIC
VKSTT
DEG_SPOP_SBC_1
0.75
p.V490M
SW48
large_intestine
COSMIC
VKSTT
DEG_SPOP_SBC_1
0.1944
p.G488D
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
VKSTT
DEG_SPOP_SBC_1
0.25
Drug responses associated with KDM2B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P40692
DNA mismatch repair protein Mlh1
DEG_SPOP_SBC_1
360:364
VKSTT
SPOP
0.9571
More...
Q8NHM5
Lysine-specific demethylase 2B
DEG_SPOP_SBC_1
481:485
VKSTT
SPOP
0.9987
More...
Q9NQW6
Anillin
DEG_SPOP_SBC_1
297:301
VKSTT
SPOP
0.991
More...
Q9Y265
RuvB-like 1
DEG_SPOP_SBC_1
6:10
VKSTT
SPOP
0.8534
More...