DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VRTST
Uniprot ID:
Q9UK17
Source protein:
Potassium voltage-gated channel subfamily D member 3
Source gene:
KCND3
Class:
DEG_SPOP_SBC_1
Location:
500:504
E3 ligase:
SPOP
DEGRON score:
0.8401
ASA_SCORE:
89.38
COIL:
0.7902
CONS_SCORE:
0.3405
DSS_SCORE:
0.2358
HELIX:
0.1324
FCONS_SCORE:
1.0206
RIG_SCORE:
0.7941
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E509K
TCGA-19-5956
GBM
TCGA
VRTST
DEG_SPOP_SBC_1
0.1944
p.E509K
TCGA-AG-A002
READ
TCGA
VRTST
DEG_SPOP_SBC_1
0.1944
p.L492I
TCGA-B5-A1MR
UCEC
TCGA
VRTST
DEG_SPOP_SBC_1
0.1111
p.L492I
DO41758
UCEC
ICGC
VRTST
DEG_SPOP_SBC_1
0.1111
p.I505M
TCGA-C8-A26X
BRCA
TCGA
VRTST
DEG_SPOP_SBC_1
0.3056
p.I505M
TCGA-DK-AA71
BLCA
TCGA
VRTST
DEG_SPOP_SBC_1
0.3056
p.I505M
DO219010
BLCA
ICGC
VRTST
DEG_SPOP_SBC_1
0.3056
p.I505M
DO5549
BRCA
ICGC
VRTST
DEG_SPOP_SBC_1
0.3056
p.R501Q
TCGA-DA-A1IC
SKCM
TCGA
VRTST
DEG_SPOP_SBC_1
0.6218
p.R501Q
DO233764
GACA
ICGC
VRTST
DEG_SPOP_SBC_1
0.6218
p.R501Q
DO37430
SKCM
ICGC
VRTST
DEG_SPOP_SBC_1
0.6218
p.P496H
TCGA-HU-A4GU
STAD
TCGA
VRTST
DEG_SPOP_SBC_1
0.2222
p.P496H
DO47849
STAD
ICGC
VRTST
DEG_SPOP_SBC_1
0.2222
p.T502A
DO222798
COCA
ICGC
VRTST
DEG_SPOP_SBC_1
0.7139
p.E490K
DO13863
GBM
ICGC
VRTST
DEG_SPOP_SBC_1
0.0556
p.E490K
DO228971
LICA
ICGC
VRTST
DEG_SPOP_SBC_1
0.0556
p.Q495K
DO229028
LICA
ICGC
VRTST
DEG_SPOP_SBC_1
0.1944
p.N500K
DO229006
LICA
ICGC
VRTST
DEG_SPOP_SBC_1
0.6918
p.Q499K
DO229009
LICA
ICGC
VRTST
DEG_SPOP_SBC_1
0.75
p.T502I
DO231712
LINC
ICGC
VRTST
DEG_SPOP_SBC_1
0.7078
p.E498Q
DO23742
LUAD
ICGC
VRTST
DEG_SPOP_SBC_1
0.2778
p.E503K
DO222843
MELA
ICGC
VRTST
DEG_SPOP_SBC_1
0.7022
p.E503G
DO229208
THCA
ICGC
VRTST
DEG_SPOP_SBC_1
0.7199
p.D494G
SIDM00217
Colorectal Carcinoma
GDSC
VRTST
DEG_SPOP_SBC_1
0.1667
p.D494G
ACH-000999
Colon/Colorectal Cancer
CCLE
VRTST
DEG_SPOP_SBC_1
0.1667
p.D494G
SNU-1040
large_intestine
COSMIC
VRTST
DEG_SPOP_SBC_1
0.1667
p.M506I
ACH-000495
Kidney Cancer
CCLE
VRTST
DEG_SPOP_SBC_1
0.2778
Drug responses associated with KCND3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q2TAC2
Coiled-coil domain-containing protein 57
DEG_SPOP_SBC_1
620:624
VRTST
SPOP
0.5097
More...
Q96D42
Hepatitis A virus cellular receptor 1
DEG_SPOP_SBC_1
144:148
VRTST
SPOP
0.9891
More...
Q9UK17
Potassium voltage-gated channel subfamily D member 3
DEG_SPOP_SBC_1
500:504
VRTST
SPOP
0.8401
More...