DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VRTTS
Uniprot ID:
Q86VP3
Source protein:
Phosphofurin acidic cluster sorting protein 2
Source gene:
PACS2
Class:
DEG_SPOP_SBC_1
Location:
240:244
E3 ligase:
SPOP
DEGRON score:
0.9252
ASA_SCORE:
95.22
COIL:
0.7852
CONS_SCORE:
0.3018
DSS_SCORE:
0.5514
HELIX:
0.1888
FCONS_SCORE:
0.6077
RIG_SCORE:
0.7684
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S238L
TCGA-90-A4ED
LUSC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7222
p.S238L
TCGA-D3-A8GM
SKCM
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7222
p.S238L
TCGA-EO-A3B0
UCEC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7222
p.R237I
TCGA-AX-A2HC
UCEC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.25
p.T242M
TCGA-EO-A3B0
UCEC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7423
p.T242M
TCGA-EY-A549
UCEC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7423
p.T246I
TCGA-FI-A2D0
UCEC
TCGA
VRTTS
DEG_SPOP_SBC_1
0.7222
p.N250Y
TCGA-FP-8099
STAD
TCGA
VRTTS
DEG_SPOP_SBC_1
0.1667
p.R236W
TCGA-VQ-A8P2
STAD
TCGA
VRTTS
DEG_SPOP_SBC_1
0.2222
p.E253K
DO51865
BLCA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.0833
p.S241L
DO1555
BRCA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.7667
p.G245E
DO2401
BRCA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.3056
p.V234M
DO234377
ESAD
ICGC
VRTTS
DEG_SPOP_SBC_1
0.2778
p.H248Y
DO19663
KIRC
ICGC
VRTTS
DEG_SPOP_SBC_1
0.2222
p.H248Y
CAL-62
thyroid
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.2222
p.A233S
DO228976
LICA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.25
p.A230S
DO228976
LICA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.0556
p.Q252H
DO229026
LICA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.2222
p.G245R
DO22986
LIHC
ICGC
VRTTS
DEG_SPOP_SBC_1
0.3056
p.S249F
DO222434
MELA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.1944
p.F232V
DO50083
OV
ICGC
VRTTS
DEG_SPOP_SBC_1
0.1111
p.S249P
DO218878
SKCA
ICGC
VRTTS
DEG_SPOP_SBC_1
0.1944
p.P250S
DO37406
SKCM
ICGC
VRTTS
DEG_SPOP_SBC_1
0.1667
p.R230Q
DO41999
UCEC
ICGC
VRTTS
DEG_SPOP_SBC_1
0.0556
p.P250L
IGR-1
skin
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.1667
p.D236E
SUP-B8
haematopoietic_and_lymphoid_tissue
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.2222
p.D236E
NCI-H2066
lung
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.2222
p.Q243K
KARPAS-620
haematopoietic_and_lymphoid_tissue
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.6944
p.S252W
HT
haematopoietic_and_lymphoid_tissue
COSMIC
VRTTS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with PACS2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95819
Mitogen-activated protein kinase kinase kinase kinase 4
DEG_SPOP_SBC_1
625:629
VRTTS
SPOP
0.9834
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
7603:7607
VRTTS
SPOP
0.8942
More...
Q86VP3
Phosphofurin acidic cluster sorting protein 2
DEG_SPOP_SBC_1
240:244
VRTTS
SPOP
0.9252
More...