DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VYSST
Uniprot ID:
P13611
Source protein:
Versican core protein
Source gene:
VCAN
Class:
DEG_SPOP_SBC_1
Location:
1740:1744
E3 ligase:
SPOP
DEGRON score:
0.8735
ASA_SCORE:
80.34
COIL:
0.6248
CONS_SCORE:
0.372
DSS_SCORE:
0.477
HELIX:
0.0208
FCONS_SCORE:
0.8703
RIG_SCORE:
0.7827
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F1754I
TCGA-17-Z022
LUAD
TCGA
VYSST
DEG_SPOP_SBC_1
0.0556
p.G1730R
TCGA-EB-A85I
SKCM
TCGA
VYSST
DEG_SPOP_SBC_1
0.0556
p.G1730R
DO50296
SKCM
ICGC
VYSST
DEG_SPOP_SBC_1
0.0556
p.T1734S
TCGA-FR-A7U9
SKCM
TCGA
VYSST
DEG_SPOP_SBC_1
0.1667
p.T1734S
DO48546
SKCM
ICGC
VYSST
DEG_SPOP_SBC_1
0.1667
p.T1734M
TCGA-FR-A7U9
SKCM
TCGA
VYSST
DEG_SPOP_SBC_1
0.1667
p.T1734M
DO48546
SKCM
ICGC
VYSST
DEG_SPOP_SBC_1
0.1667
p.P1753S
TCGA-GF-A6C9
SKCM
TCGA
VYSST
DEG_SPOP_SBC_1
0.0833
p.P1753S
DO51254
SKCM
ICGC
VYSST
DEG_SPOP_SBC_1
0.0833
p.S1747L
TCGA-VQ-A8PB
STAD
TCGA
VYSST
DEG_SPOP_SBC_1
0.25
p.S1747L
DO233118
GACA
ICGC
VYSST
DEG_SPOP_SBC_1
0.25
p.S1747L
DO229177
LMS
ICGC
VYSST
DEG_SPOP_SBC_1
0.25
p.S1747L
DO51766
STAD
ICGC
VYSST
DEG_SPOP_SBC_1
0.25
p.T1731P
TCGA-YD-A9TA
SKCM
TCGA
VYSST
DEG_SPOP_SBC_1
0.0833
p.T1731P
DO219503
SKCM
ICGC
VYSST
DEG_SPOP_SBC_1
0.0833
p.G1730E
DO222632
MELA
ICGC
VYSST
DEG_SPOP_SBC_1
0.0556
p.S1743A
SIDM00193
Colorectal Carcinoma
GDSC
VYSST
DEG_SPOP_SBC_1
0.7588
p.S1743A
ACH-000991
Colon/Colorectal Cancer
CCLE
VYSST
DEG_SPOP_SBC_1
0.7588
p.S1743A
SNU-81
large_intestine
COSMIC
VYSST
DEG_SPOP_SBC_1
0.7588
p.T1737I
SIDM00092
Ovarian Carcinoma
GDSC
VYSST
DEG_SPOP_SBC_1
0.25
p.T1737I
ACH-000617
Ovarian Cancer
CCLE
VYSST
DEG_SPOP_SBC_1
0.25
p.T1737I
OVCAR-4
ovary
COSMIC
VYSST
DEG_SPOP_SBC_1
0.25
p.E1739D
ACH-000937
Leukemia
CCLE
VYSST
DEG_SPOP_SBC_1
0.3056
p.I1751M
KCL-22
haematopoietic_and_lymphoid_tissue
COSMIC
VYSST
DEG_SPOP_SBC_1
0.1389
p.G1741D
CP66-MEL
skin
COSMIC
VYSST
DEG_SPOP_SBC_1
0.7198
Drug responses associated with VCAN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VYSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75113
NEDD4-binding protein 1
DEG_SPOP_SBC_1
414:418
VYSST
SPOP
0.9819
More...
P13611
Versican core protein
DEG_SPOP_SBC_1
1740:1744
VYSST
SPOP
0.8735
More...
Q9NR34
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC
DEG_SPOP_SBC_1
568:572
VYSST
SPOP
0.5468
More...