Gene: IFT88

Basic information

Tag Content
Uniprot ID G1SJN9
Entrez ID 100009576
Genbank protein ID
Genbank nucleotide ID XM_008259933.2; XM_017343475.1; XM_017343476.1; XM_008259934.2;
Ensembl protein ID ENSOCUP00000002963
Ensembl nucleotide ID ENSOCUG00000003414
Gene name Intraflagellar transport 88
Gene symbol IFT88
Organism Oryctolagus cuniculus
NCBI taxa ID 9986
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MMQNVHLAPE TDEDDLYSGY NDYNPTYDTE DLENDTAFQQ AVRTSHGRRH PITAKIPSTA 60
VTRPVATGYG SKTSLASSMG RPMTGAIQDG VTRPMTAVRA AGFTKAALRG SSFDPLGQSR 120
GPAPPLEAKN EDSPEEKIRQ LEKKVNELVE ESCIANSCGD LKLALEKAKD AGRKERVLVR 180
QREQVTTPEN INLDLTYSVL FNLANQYSAN EMYTEALNTY QVIVKNKMFS NAGKLKMNMG 240
NIYLKQRNYS KAIKFYRMAL DQIPSVHKEM RIKIMQNIGV TFIKTGQYSD AINSFEHIMS 300
MAPNLKAGFN LILSYFAIGD QEKMKKSFQK LIAVPLEIDE DDKYISPSDD PHTNLVIEAI 360
KNDHLRQMER ERKAMAEKYI MTAAKLIAPV IETSFAVGYD WCVEVVKASQ YVELANDLEI 420
NKAITYLRQK DFTQAVDTLK MFEKKDSRVK SAAATNLSFL YYLENEFAQA SSYADLAVNS 480
DRYNPSALTN KGNTVFANGD YEKAAEFYKE ALRNDSSCTE ALYNIGLSYK KLNRLSEALD 540
CFLKLHAILR NSAQVLYQIA NVYELMEDPN QAIEWLMQLI SVVPTDSRAL SKLGELHDSE 600
GDKSQAFQYY YESYRYFPSN IEVIEWLGAY YIDTQFCEKA IQYFERASLI QPTQVKWQLM 660
VASCFRRSGN YQKALDTYKD IHKKFPENVE CLRFLVRLCT DIGLKEVQEY ATKLKRLEKM 720
KEIREQRIKS GRDGSGGSRG KREGSAGSDS GQNCSASSKS ERLSAKLRAL PGTNEPYESS 780
SNKEIDASYV DPLGPQVERP KTAAKKRVDE DDFADEELGD DLLPE 825

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologIFT88514177E1BLX1Bos taurusPredictionMore>>
1:1 orthologIFT88477345E2R838Canis lupus familiarisPredictionMore>>
1:1 orthologIFT88A0A452FFN1Capra hircusPredictionMore>>
1:1 orthologIFT888100Q13099Homo sapiensPredictionMore>>
1:1 orthologIft8821821Q61371CPO,CLP,CLOMus musculusPublicationMore>>
1:1 orthologIFT88A0A2I3RWX3Pan troglodytesPredictionMore>>
1:1 orthologI3LER9Sus scrofaPredictionMore>>
1:1 orthologIFT88100009576G1SJN9Oryctolagus cuniculusPredictionMore>>
1:1 orthologIft88305918A0A096MK92Rattus norvegicusPredictionMore>>
1:1 orthologift88B0UYB0Danio rerioPredictionMore>>

Gene ontology

GO ID GO Term

Functional annotations

Keywords

Keyword ID Keyword Term
KW-1185 Reference proteome
KW-0802 TPR repeat

Interpro

InterPro ID InterPro Term
IPR013026 TPR-contain_dom
IPR011990 TPR-like_helical_dom_sf
IPR019734 TPR_repeat

PROSITE

PROSITE ID PROSITE Term
PS50005 TPR
PS50293 TPR_REGION

Pfam

Pfam ID Pfam Term
PF13174 TPR_6
PF13181 TPR_8