Gene: Hkdc1

Basic information

Tag Content
Uniprot ID Q91W97; Q3UKJ9;
Entrez ID 216019
Genbank protein ID AAH16235.1; BAE26802.1;
Genbank nucleotide ID NM_145419.1
Ensembl protein ID ENSMUSP00000020277
Ensembl nucleotide ID ENSMUSG00000020080
Gene name Hexokinase HKDC1
Gene symbol Hkdc1
Organism Mus musculus
NCBI taxa ID 10090
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Catalyzes the phosphorylation of hexose to hexose 6-phosphate, although at very low level compared to other hexokinases (By similarity). Has low glucose phosphorylating activity compared to other hexokinases (By similarity). Involved in glucose homeostasis and hepatic lipid accumulation (PubMed:30543855). Required to maintain whole-body glucose homeostasis during pregnancy; however additional evidences are required to confirm this role (PubMed:25648650, PubMed:27459389).
Sequence
MFAVHLVAFY FTKLKEDQIK KVDRFLYHMR LSDETLVDIM ARFQAEMEKG LGKDTNPTAS 60
VKMLPTFVRA IPDGSENGEF LSLDLGGSKF RVLKVQVSQE GQQNVQMESQ FYPMPNEITR 120
GNGTELFDYV ADCLADFMKT KNLTHKKLPL GFTFSFPCRQ NKLEEGVLLS WTKKFKARGV 180
QDTDVVNRLA TAMKKHKDLD VDILALVNDT VGTMMTCAYD DPNCEVGVII GTGTNACYME 240
DMSNIDLVEG DEGRMCINTE WGAFGDDGAL EDIRTEFDRE LDLGSLNPGK QLFEKMISGL 300
YMGELVRLIL LKMAKVGLLF GGAKSSALHT KGKIETQHVA AMEMSKEGLA NTREILVDLG 360
LEPSESDCIA VQHVCTIVSF RSANLCAAAL ATILTRLREN KKLARLRTTV GMDGTLYKTH 420
PQYPKRLHKV VRRLVPNCDV RFLLSESGST KGAAMVTAVA SRVQAQRKQI DKVLALFQLT 480
REQLLGVRDK MRAELEYGLK KKTHSLATVK MLPTYVYGMP DGTEKGKFLA LDLGGTNFRV 540
LLVKIRRRSV RMYNKIFAIP LEIMQGTGEE LFDHIVQCIA DFLDYMGLKG AQLPLGFTFS 600
FPCRQTCIDK GTLVGWTKGF KATDCEGEDV VDMLREAIKR RNEFDLDIVA IVNDTVGTMM 660
TCGYEDPRCE IGLIAGTGSN VCYMEEMRNI ELVDGDEGRM CVNTEWGGFG DNGCIDDIRT 720
QYDKEVDEGS LNAGKQRYEK MTSGMYLGEI VRRILIDLTR QGLLFRGQIS ERLRTRGIFE 780
TKFLSQIESD RLALLQVRRI LQQLGLDSTC EDSIVVKEVC GAVSRRAAQM CGAGMAAIVE 840
KRREDQGLQH FKVTVGVDGT LYKLHPHFSR ILQETVKELA PQCDVTFMLS EDGSGKGAAL 900
ITAVAKRLQQ PRKDI 915

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologHKDC1489019J9JHN0Canis lupus familiarisPredictionMore>>
1:1 orthologHKDC1102189736A0A452E4U0Capra hircusPredictionMore>>
1:1 orthologHKDC1100072686A0A3Q2HML6Equus caballusPredictionMore>>
1:1 orthologHKDC180201Q2TB90Homo sapiensPublicationMore>>
1:1 orthologHkdc1216019Q91W97Mus musculusPredictionMore>>
1:1 orthologHKDC1450504H2Q205Pan troglodytesPredictionMore>>
1:1 orthologHKDC1F1SUF3Sus scrofaPredictionMore>>
1:1 orthologHKDC1100345105G1SMV5Oryctolagus cuniculusPredictionMore>>
1:1 orthologM0R3X7Rattus norvegicusPredictionMore>>
1:1 orthologhkdc1321224B8A5H6Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
HKDC1rs201518882C>T; p.Arg768*WES and Sanger sequencing27229527

Other genetic variants/mutations

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004340 glucokinase activityISS
GO:0004340 glucokinase activityISO
GO:0004340 glucokinase activityIBA
GO:0005524 ATP bindingIEA
GO:0005536 glucose bindingIEA
GO:0008865 fructokinase activityIBA
GO:0019158 mannokinase activityIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0001678 cellular glucose homeostasisISO
GO:0001678 cellular glucose homeostasisIBA
GO:0001678 cellular glucose homeostasisIMP
GO:0006096 glycolytic processIEA
GO:0006096 glycolytic processIBA
GO:0019318 hexose metabolic processIEA
GO:0046835 carbohydrate phosphorylationIEA
GO:0051156 glucose 6-phosphate metabolic processISS
GO:0051156 glucose 6-phosphate metabolic processISO

GO:Cellular Component

GO ID GO Term Evidence
GO:0005623 cellIEA
GO:0005739 mitochondrionISS
GO:0005739 mitochondrionISO
GO:0005829 cytosolIBA
GO:0031966 mitochondrial membraneIEA

Reactome Pathway

Reactome ID Reactome Term Evidence

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0067 ATP-binding
KW-0324 Glycolysis
KW-0418 Kinase
KW-0472 Membrane
KW-0496 Mitochondrion
KW-0547 Nucleotide-binding
KW-1185 Reference proteome
KW-0677 Repeat
KW-0808 Transferase

Interpro

InterPro ID InterPro Term
IPR043129 ATPase_NBD
IPR001312 Hexokinase
IPR019807 Hexokinase_BS
IPR022673 Hexokinase_C
IPR022672 Hexokinase_N

PROSITE

PROSITE ID PROSITE Term
PS00378 HEXOKINASE_1
PS51748 HEXOKINASE_2

Pfam

Pfam ID Pfam Term
PF00349 Hexokinase_1
PF03727 Hexokinase_2

Protein-protein interaction

Protein-miRNA interaction