Gene: NECTIN2

Basic information

Tag Content
Uniprot ID Q92692; A8K5L5; O75455; Q6IBI6; Q96J29;
Entrez ID 5819
Genbank protein ID AAH03091.1; CAA56342.1; AAD02503.1; EAW57298.1; CAG33099.1; BAF84019.1; AAC82348.1; AAC23797.1;
Genbank nucleotide ID NM_002856.2; NM_001042724.1;
Ensembl protein ID ENSP00000252483; ENSP00000252485;
Ensembl nucleotide ID ENSG00000130202
Gene name Nectin-2
Gene symbol NECTIN2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 21462296; 20572854; 20662561; 16641627;
Functional description Modulator of T-cell signaling. Can be either a costimulator of T-cell function, or a coinhibitor, depending on the receptor it binds to. Upon binding to CD226, stimulates T-cell proliferation and cytokine production, including that of IL2, IL5, IL10, IL13, and IFNG. Upon interaction with PVRIG, inhibits T-cell proliferation. These interactions are competitive (PubMed:26755705). Probable cell adhesion protein (PubMed:9657005).
Sequence
MARAAALLPS RSPPTPLLWP LLLLLLLETG AQDVRVQVLP EVRGQLGGTV ELPCHLLPPV 60
PGLYISLVTW QRPDAPANHQ NVAAFHPKMG PSFPSPKPGS ERLSFVSAKQ STGQDTEAEL 120
QDATLALHGL TVEDEGNYTC EFATFPKGSV RGMTWLRVIA KPKNQAEAQK VTFSQDPTTV 180
ALCISKEGRP PARISWLSSL DWEAKETQVS GTLAGTVTVT SRFTLVPSGR ADGVTVTCKV 240
EHESFEEPAL IPVTLSVRYP PEVSISGYDD NWYLGRTDAT LSCDVRSNPE PTGYDWSTTS 300
GTFPTSAVAQ GSQLVIHAVD SLFNTTFVCT VTNAVGMGRA EQVIFVRETP NTAGAGATGG 360
IIGGIIAAII ATAVAATGIL ICRQQRKEQT LQGAEEDEDL EGPPSYKPPT PKAKLEAQEM 420
PSQLFTLGAS EHSPLKTPYF DAGASCTEQE MPRYHELPTL EERSGPLHPG ATSLGSPIPV 480
PPGPPAVEDV SLDLEDEEGE EEEEYLDKIN PIYDALSYSS PSDSYQGKGF VMSRAMYV 538

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologNECTIN2505580Q17QC7Bos taurusPredictionMore>>
1:1 orthologNECTIN2611060F1PWL4Canis lupus familiarisPredictionMore>>
1:1 orthologNECTIN2A0A452G7Y9Capra hircusPredictionMore>>
1:1 orthologNECTIN2100065463F6YWH3Equus caballusPredictionMore>>
1:1 orthologNECTIN25819Q92692Homo sapiensPublicationMore>>
1:1 orthologNectin219294P32507Mus musculusPredictionMore>>
1:1 orthologNECTIN2456118K6ZRP3Pan troglodytesPredictionMore>>
1:1 orthologNECTIN2100038012A2TEQ2Sus scrofaPredictionMore>>
1:1 orthologNectin2308417A0A0G2KA71Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0001618 virus receptor activityIEA
GO:0005515 protein bindingIPI
GO:0015026 coreceptor activityTAS
GO:0042802 identical protein bindingIPI
GO:0042803 protein homodimerization activityIEA
GO:0050839 cell adhesion molecule bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0001675 acrosome assemblyIEA
GO:0002860 positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell targetIMP
GO:0002891 positive regulation of immunoglobulin mediated immune responseIMP
GO:0007010 cytoskeleton organizationIEA
GO:0007156 homophilic cell adhesion via plasma membrane adhesion moleculesIDA
GO:0007286 spermatid developmentISS
GO:0007289 spermatid nucleus differentiationIEA
GO:0009566 fertilizationIEA
GO:0019064 fusion of virus membrane with host plasma membraneIDA
GO:0030382 sperm mitochondrion organizationIEA
GO:0032990 cell part morphogenesisIEA
GO:0033005 positive regulation of mast cell activationIMP
GO:0034332 adherens junction organizationTAS
GO:0042271 susceptibility to natural killer cell mediated cytotoxicityIMP
GO:0044406 adhesion of symbiont to hostIDA
GO:0044782 cilium organizationIEA
GO:0045954 positive regulation of natural killer cell mediated cytotoxicityIMP
GO:0046596 regulation of viral entry into host cellIDA
GO:0046814 coreceptor-mediated virion attachment to host cellIDA
GO:0050776 regulation of immune responseTAS
GO:0050862 positive regulation of T cell receptor signaling pathwayIDA
GO:0051654 establishment of mitochondrion localizationIEA
GO:0060370 susceptibility to T cell mediated cytotoxicityIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005886 plasma membraneTAS
GO:0005911 cell-cell junctionIDA
GO:0005915 zonula adherensISS
GO:0005925 focal adhesionHDA
GO:0009986 cell surfaceIDA
GO:0016021 integral component of membraneIDA
GO:0044291 cell-cell contact zoneIEA
GO:0070062 extracellular exosomeHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1280218 Adaptive Immune SystemTAS
R-HSA-1500931 Cell-Cell communicationTAS
R-HSA-168256 Immune SystemTAS
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cellTAS
R-HSA-418990 Adherens junctions interactionsTAS
R-HSA-420597 Nectin/Necl trans heterodimerizationTAS
R-HSA-421270 Cell-cell junction organizationTAS
R-HSA-446728 Cell junction organizationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0130 Cell adhesion
KW-1003 Cell membrane
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-1183 Host cell receptor for virus entry
KW-0945 Host-virus interaction
KW-0393 Immunoglobulin domain
KW-0472 Membrane
KW-0597 Phosphoprotein
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR013162 CD80_C2-set
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR003599 Ig_sub
IPR013106 Ig_V-set
IPR033318 Nectin-2

PROSITE

PROSITE ID PROSITE Term
PS50835 IG_LIKE

Pfam

Pfam ID Pfam Term
PF08205 C2-set_2
PF07686 V-set

Protein-miRNA interaction