SZGR2

Summary ?

GeneID	23520
Symbol	ANP32C
Synonyms	PP32R1
Description	acidic nuclear phosphoprotein 32 family member C
Reference	MIM:606877\|HGNC:HGNC:16675\|HPRD:06045\|
Gene type	protein-coding
Map location	4q32.3
Pascal p-value	0.023
eGene	Myers' cis & trans

Gene in Data Sources

Gene set name	Method of gene set	Description	Info
CV:PGCnp	Genome-wide Association Study	GWAS

Section I. Genetics and epigenetics annotation

eQTL annotation

SNP ID	Chromosome	Position	eGene	Gene Entrez ID	pvalue	qvalue	TSS distance	eQTL type
rs7023147	chr9	10077179	ANP32C	23520		0.18		trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
Gene	Pearson's Correlation	Spearman's Correlation
FOXP1	0.77	0.69
SPATS2L	0.74	0.76
RARB	0.73	0.73
ST6GALNAC5	0.73	0.79
TSHZ1	0.72	0.63
SERTAD4	0.72	0.76
EPHA4	0.71	0.80
NCOA1	0.70	0.60
GUCY1A3	0.70	0.65
MAP3K1	0.70	0.51

Top 10 negatively co-expressed genes
Gene	Pearson's Correlation	Spearman's Correlation
MT-CO2	-0.43	-0.47
HIGD1B	-0.42	-0.46
AF347015.31	-0.42	-0.45
AF347015.2	-0.42	-0.45
FXYD1	-0.41	-0.41
AF347015.26	-0.41	-0.43
MT-CYB	-0.41	-0.43
AF347015.8	-0.40	-0.44
AF347015.21	-0.40	-0.42
AF347015.33	-0.40	-0.41

Section V. Pathway annotation

Pathway name	Pathway size	# SZGR 2.0 genes in pathway	Info
MULLIGHAN MLL SIGNATURE 1 DN	242	165	All SZGR 2.0 genes in this pathway
PEDRIOLI MIR31 TARGETS DN	418	245	All SZGR 2.0 genes in this pathway