Gene Page: TUBG2
Summary ?
| GeneID | 27175 |
| Symbol | TUBG2 |
| Synonyms | - |
| Description | tubulin gamma 2 |
| Reference | MIM:605785|HGNC:HGNC:12419|Ensembl:ENSG00000037042|HPRD:05778|Vega:OTTHUMG00000180640 |
| Gene type | protein-coding |
| Map location | 17q21 |
| Pascal p-value | 0.071 |
| Sherlock p-value | 0.218 |
| Fetal beta | -0.611 |
| DMG | 1 (# studies) |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellum Cortex Frontal Cortex BA9 Hippocampus Hypothalamus Nucleus accumbens basal ganglia Putamen basal ganglia Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Jaffe_2016 | Genome-wide DNA methylation analysis | This dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. | 1 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg25181941 | 17 | 40805728 | TUBG2 | 7.68E-10 | -0.023 | 1.03E-6 | DMG:Jaffe_2016 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs12453490 | 17 | 40698542 | TUBG2 | ENSG00000037042.8 | 3.142E-6 | 0 | -112781 | gtex_brain_ba24 |
| rs62075837 | 17 | 40702283 | TUBG2 | ENSG00000037042.8 | 2.45E-6 | 0 | -109040 | gtex_brain_ba24 |
| rs2676532 | 17 | 40704008 | TUBG2 | ENSG00000037042.8 | 2.976E-8 | 0 | -107315 | gtex_brain_ba24 |
| rs2676531 | 17 | 40704185 | TUBG2 | ENSG00000037042.8 | 2.611E-8 | 0 | -107138 | gtex_brain_ba24 |
| rs2830 | 17 | 40704563 | TUBG2 | ENSG00000037042.8 | 3.52E-8 | 0 | -106760 | gtex_brain_ba24 |
| rs597255 | 17 | 40705100 | TUBG2 | ENSG00000037042.8 | 2.609E-8 | 0 | -106223 | gtex_brain_ba24 |
| rs610166 | 17 | 40705715 | TUBG2 | ENSG00000037042.8 | 8.109E-9 | 0 | -105608 | gtex_brain_ba24 |
| rs610177 | 17 | 40705724 | TUBG2 | ENSG00000037042.8 | 2.611E-8 | 0 | -105599 | gtex_brain_ba24 |
| rs605059 | 17 | 40706906 | TUBG2 | ENSG00000037042.8 | 8.028E-9 | 0 | -104417 | gtex_brain_ba24 |
| rs592389 | 17 | 40707444 | TUBG2 | ENSG00000037042.8 | 2.605E-8 | 0 | -103879 | gtex_brain_ba24 |
| rs637627 | 17 | 40710438 | TUBG2 | ENSG00000037042.8 | 2.219E-8 | 0 | -100885 | gtex_brain_ba24 |
| rs608061 | 17 | 40711808 | TUBG2 | ENSG00000037042.8 | 1.326E-8 | 0 | -99515 | gtex_brain_ba24 |
| rs629861 | 17 | 40714014 | TUBG2 | ENSG00000037042.8 | 2.217E-8 | 0 | -97309 | gtex_brain_ba24 |
| rs615942 | 17 | 40714804 | TUBG2 | ENSG00000037042.8 | 3.421E-8 | 0 | -96519 | gtex_brain_ba24 |
| rs666039 | 17 | 40715570 | TUBG2 | ENSG00000037042.8 | 3.917E-8 | 0 | -95753 | gtex_brain_ba24 |
| rs598126 | 17 | 40716520 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -94803 | gtex_brain_ba24 |
| rs646174 | 17 | 40720605 | TUBG2 | ENSG00000037042.8 | 3.216E-8 | 0 | -90718 | gtex_brain_ba24 |
| rs632758 | 17 | 40721360 | TUBG2 | ENSG00000037042.8 | 1.065E-7 | 0 | -89963 | gtex_brain_ba24 |
| rs2292752 | 17 | 40725656 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -85667 | gtex_brain_ba24 |
| rs2292751 | 17 | 40725799 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -85524 | gtex_brain_ba24 |
| rs1004295 | 17 | 40727427 | TUBG2 | ENSG00000037042.8 | 4.324E-8 | 0 | -83896 | gtex_brain_ba24 |
| rs878291 | 17 | 40728229 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -83094 | gtex_brain_ba24 |
| rs4793244 | 17 | 40730825 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -80498 | gtex_brain_ba24 |
| rs1517002 | 17 | 40735469 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -75854 | gtex_brain_ba24 |
| rs9889580 | 17 | 40737043 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -74280 | gtex_brain_ba24 |
| rs8073311 | 17 | 40740277 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -71046 | gtex_brain_ba24 |
| rs8066475 | 17 | 40742454 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -68869 | gtex_brain_ba24 |
| rs4375714 | 17 | 40742683 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -68640 | gtex_brain_ba24 |
| rs12938815 | 17 | 40746395 | TUBG2 | ENSG00000037042.8 | 8.13E-8 | 0 | -64928 | gtex_brain_ba24 |
| rs4793056 | 17 | 40748737 | TUBG2 | ENSG00000037042.8 | 7.066E-8 | 0 | -62586 | gtex_brain_ba24 |
| rs8076672 | 17 | 40749813 | TUBG2 | ENSG00000037042.8 | 5.302E-8 | 0 | -61510 | gtex_brain_ba24 |
| rs8077139 | 17 | 40750099 | TUBG2 | ENSG00000037042.8 | 1.036E-7 | 0 | -61224 | gtex_brain_ba24 |
| rs1504154 | 17 | 40751362 | TUBG2 | ENSG00000037042.8 | 5.302E-8 | 0 | -59961 | gtex_brain_ba24 |
| rs8068548 | 17 | 40752166 | TUBG2 | ENSG00000037042.8 | 2.756E-8 | 0 | -59157 | gtex_brain_ba24 |
| rs9913356 | 17 | 40753332 | TUBG2 | ENSG00000037042.8 | 5.302E-8 | 0 | -57991 | gtex_brain_ba24 |
| rs12949175 | 17 | 40753628 | TUBG2 | ENSG00000037042.8 | 2.407E-8 | 0 | -57695 | gtex_brain_ba24 |
| rs9901225 | 17 | 40755811 | TUBG2 | ENSG00000037042.8 | 8.217E-8 | 0 | -55512 | gtex_brain_ba24 |
| rs4793036 | 17 | 40757564 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -53759 | gtex_brain_ba24 |
| rs3760389 | 17 | 40760129 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -51194 | gtex_brain_ba24 |
| rs9897375 | 17 | 40760875 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -50448 | gtex_brain_ba24 |
| rs12952983 | 17 | 40763386 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -47937 | gtex_brain_ba24 |
| rs66838751 | 17 | 40763855 | TUBG2 | ENSG00000037042.8 | 1.978E-7 | 0 | -47468 | gtex_brain_ba24 |
| rs1045710 | 17 | 40766546 | TUBG2 | ENSG00000037042.8 | 2.346E-7 | 0 | -44777 | gtex_brain_ba24 |
| rs67071086 | 17 | 40767564 | TUBG2 | ENSG00000037042.8 | 8.127E-8 | 0 | -43759 | gtex_brain_ba24 |
| rs9911799 | 17 | 40767688 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -43635 | gtex_brain_ba24 |
| rs9674596 | 17 | 40769225 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -42098 | gtex_brain_ba24 |
| rs9674578 | 17 | 40769326 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -41997 | gtex_brain_ba24 |
| rs1024091 | 17 | 40771994 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -39329 | gtex_brain_ba24 |
| rs11649877 | 17 | 40772397 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -38926 | gtex_brain_ba24 |
| rs12942278 | 17 | 40772870 | TUBG2 | ENSG00000037042.8 | 6.024E-8 | 0 | -38453 | gtex_brain_ba24 |
| rs67653642 | 17 | 40775026 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -36297 | gtex_brain_ba24 |
| rs11079050 | 17 | 40775433 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -35890 | gtex_brain_ba24 |
| rs2102240 | 17 | 40777072 | TUBG2 | ENSG00000037042.8 | 6.451E-8 | 0 | -34251 | gtex_brain_ba24 |
| rs2089114 | 17 | 40777251 | TUBG2 | ENSG00000037042.8 | 3.207E-8 | 0 | -34072 | gtex_brain_ba24 |
| rs2355377 | 17 | 40777750 | TUBG2 | ENSG00000037042.8 | 4.125E-8 | 0 | -33573 | gtex_brain_ba24 |
| rs4277395 | 17 | 40778768 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -32555 | gtex_brain_ba24 |
| rs12953018 | 17 | 40778888 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -32435 | gtex_brain_ba24 |
| rs2355372 | 17 | 40779867 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -31456 | gtex_brain_ba24 |
| rs11653909 | 17 | 40782447 | TUBG2 | ENSG00000037042.8 | 6.039E-8 | 0 | -28876 | gtex_brain_ba24 |
| rs4793005 | 17 | 40784194 | TUBG2 | ENSG00000037042.8 | 3.194E-8 | 0 | -27129 | gtex_brain_ba24 |
| rs12937984 | 17 | 40786248 | TUBG2 | ENSG00000037042.8 | 7.901E-8 | 0 | -25075 | gtex_brain_ba24 |
| rs12944420 | 17 | 40792710 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -18613 | gtex_brain_ba24 |
| rs9910501 | 17 | 40794280 | TUBG2 | ENSG00000037042.8 | 1.233E-7 | 0 | -17043 | gtex_brain_ba24 |
| rs9913172 | 17 | 40794305 | TUBG2 | ENSG00000037042.8 | 2.873E-7 | 0 | -17018 | gtex_brain_ba24 |
| rs2089117 | 17 | 40795384 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -15939 | gtex_brain_ba24 |
| rs2089118 | 17 | 40795390 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -15933 | gtex_brain_ba24 |
| rs4584877 | 17 | 40796311 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -15012 | gtex_brain_ba24 |
| rs8079242 | 17 | 40797107 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -14216 | gtex_brain_ba24 |
| rs8079396 | 17 | 40797184 | TUBG2 | ENSG00000037042.8 | 1.096E-7 | 0 | -14139 | gtex_brain_ba24 |
| rs4793066 | 17 | 40801475 | TUBG2 | ENSG00000037042.8 | 2.308E-7 | 0 | -9848 | gtex_brain_ba24 |
| rs56317044 | 17 | 40802376 | TUBG2 | ENSG00000037042.8 | 6.043E-7 | 0 | -8947 | gtex_brain_ba24 |
| rs7221994 | 17 | 40803145 | TUBG2 | ENSG00000037042.8 | 6.043E-7 | 0 | -8178 | gtex_brain_ba24 |
| rs12940074 | 17 | 40803294 | TUBG2 | ENSG00000037042.8 | 2.306E-7 | 0 | -8029 | gtex_brain_ba24 |
| rs12941229 | 17 | 40803870 | TUBG2 | ENSG00000037042.8 | 3.399E-7 | 0 | -7453 | gtex_brain_ba24 |
| rs12940478 | 17 | 40803950 | TUBG2 | ENSG00000037042.8 | 2.55E-7 | 0 | -7373 | gtex_brain_ba24 |
| rs4792929 | 17 | 40805777 | TUBG2 | ENSG00000037042.8 | 1.165E-7 | 0 | -5546 | gtex_brain_ba24 |
| rs201186320 | 17 | 40805790 | TUBG2 | ENSG00000037042.8 | 7.648E-7 | 0 | -5533 | gtex_brain_ba24 |
| rs35441744 | 17 | 40805799 | TUBG2 | ENSG00000037042.8 | 1.076E-7 | 0 | -5524 | gtex_brain_ba24 |
| rs4792930 | 17 | 40805844 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -5479 | gtex_brain_ba24 |
| rs7225102 | 17 | 40807155 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -4168 | gtex_brain_ba24 |
| rs7225109 | 17 | 40807170 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -4153 | gtex_brain_ba24 |
| rs7217821 | 17 | 40807341 | TUBG2 | ENSG00000037042.8 | 2.873E-7 | 0 | -3982 | gtex_brain_ba24 |
| rs12943352 | 17 | 40808069 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -3254 | gtex_brain_ba24 |
| rs11871463 | 17 | 40808446 | TUBG2 | ENSG00000037042.8 | 2.873E-7 | 0 | -2877 | gtex_brain_ba24 |
| rs1910563 | 17 | 40808838 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -2485 | gtex_brain_ba24 |
| rs12935869 | 17 | 40809090 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -2233 | gtex_brain_ba24 |
| rs9898439 | 17 | 40809583 | TUBG2 | ENSG00000037042.8 | 2.681E-7 | 0 | -1740 | gtex_brain_ba24 |
| rs9904643 | 17 | 40809723 | TUBG2 | ENSG00000037042.8 | 1.066E-7 | 0 | -1600 | gtex_brain_ba24 |
| rs2292750 | 17 | 40811781 | TUBG2 | ENSG00000037042.8 | 2.645E-8 | 0 | 458 | gtex_brain_ba24 |
| rs525911 | 17 | 40811919 | TUBG2 | ENSG00000037042.8 | 1.747E-7 | 0 | 596 | gtex_brain_ba24 |
| rs526779 | 17 | 40811997 | TUBG2 | ENSG00000037042.8 | 4.029E-7 | 0 | 674 | gtex_brain_ba24 |
| rs1554227 | 17 | 40818451 | TUBG2 | ENSG00000037042.8 | 6.469E-8 | 0 | 7128 | gtex_brain_ba24 |
| rs1046097 | 17 | 40818699 | TUBG2 | ENSG00000037042.8 | 8.887E-7 | 0 | 7376 | gtex_brain_ba24 |
| rs1973520 | 17 | 40821098 | TUBG2 | ENSG00000037042.8 | 9.258E-7 | 0 | 9775 | gtex_brain_ba24 |
| rs4793098 | 17 | 40833187 | TUBG2 | ENSG00000037042.8 | 1.587E-7 | 0 | 21864 | gtex_brain_ba24 |
| rs12947031 | 17 | 40834631 | TUBG2 | ENSG00000037042.8 | 1.362E-7 | 0 | 23308 | gtex_brain_ba24 |
| rs3760384 | 17 | 40835451 | TUBG2 | ENSG00000037042.8 | 7.887E-8 | 0 | 24128 | gtex_brain_ba24 |
| rs2170711 | 17 | 40596968 | TUBG2 | ENSG00000037042.8 | 6.792E-7 | 0 | -214355 | gtex_brain_putamen_basal |
| rs62075803 | 17 | 40598710 | TUBG2 | ENSG00000037042.8 | 1.393E-7 | 0 | -212613 | gtex_brain_putamen_basal |
| rs4796663 | 17 | 40600565 | TUBG2 | ENSG00000037042.8 | 4.814E-7 | 0 | -210758 | gtex_brain_putamen_basal |
| rs141079364 | 17 | 40601120 | TUBG2 | ENSG00000037042.8 | 5.751E-6 | 0 | -210203 | gtex_brain_putamen_basal |
| rs28671372 | 17 | 40601432 | TUBG2 | ENSG00000037042.8 | 1.623E-7 | 0 | -209891 | gtex_brain_putamen_basal |
| rs62075806 | 17 | 40603665 | TUBG2 | ENSG00000037042.8 | 1.396E-7 | 0 | -207658 | gtex_brain_putamen_basal |
| rs62075807 | 17 | 40603963 | TUBG2 | ENSG00000037042.8 | 1.398E-7 | 0 | -207360 | gtex_brain_putamen_basal |
| rs72823081 | 17 | 40604235 | TUBG2 | ENSG00000037042.8 | 1.454E-6 | 0 | -207088 | gtex_brain_putamen_basal |
| rs55674565 | 17 | 40604818 | TUBG2 | ENSG00000037042.8 | 1.16E-6 | 0 | -206505 | gtex_brain_putamen_basal |
| rs62075809 | 17 | 40605624 | TUBG2 | ENSG00000037042.8 | 1.408E-7 | 0 | -205699 | gtex_brain_putamen_basal |
| rs12451403 | 17 | 40606450 | TUBG2 | ENSG00000037042.8 | 1.408E-7 | 0 | -204873 | gtex_brain_putamen_basal |
| rs2301647 | 17 | 40611288 | TUBG2 | ENSG00000037042.8 | 1.408E-7 | 0 | -200035 | gtex_brain_putamen_basal |
| rs8075855 | 17 | 40622912 | TUBG2 | ENSG00000037042.8 | 2.821E-7 | 0 | -188411 | gtex_brain_putamen_basal |
| rs8080310 | 17 | 40623542 | TUBG2 | ENSG00000037042.8 | 2.653E-7 | 0 | -187781 | gtex_brain_putamen_basal |
| rs12453975 | 17 | 40633359 | TUBG2 | ENSG00000037042.8 | 1.388E-7 | 0 | -177964 | gtex_brain_putamen_basal |
| rs8069972 | 17 | 40639422 | TUBG2 | ENSG00000037042.8 | 1.163E-6 | 0 | -171901 | gtex_brain_putamen_basal |
| rs72826906 | 17 | 40641172 | TUBG2 | ENSG00000037042.8 | 8.407E-7 | 0 | -170151 | gtex_brain_putamen_basal |
| rs7211255 | 17 | 40648096 | TUBG2 | ENSG00000037042.8 | 2.289E-7 | 0 | -163227 | gtex_brain_putamen_basal |
| rs8064765 | 17 | 40678372 | TUBG2 | ENSG00000037042.8 | 1.392E-7 | 0 | -132951 | gtex_brain_putamen_basal |
| rs743592 | 17 | 40679627 | TUBG2 | ENSG00000037042.8 | 1.408E-7 | 0 | -131696 | gtex_brain_putamen_basal |
| rs12451036 | 17 | 40681407 | TUBG2 | ENSG00000037042.8 | 1.04E-6 | 0 | -129916 | gtex_brain_putamen_basal |
| rs8073150 | 17 | 40692520 | TUBG2 | ENSG00000037042.8 | 5.611E-8 | 0 | -118803 | gtex_brain_putamen_basal |
| rs1543158 | 17 | 40694005 | TUBG2 | ENSG00000037042.8 | 1.398E-7 | 0 | -117318 | gtex_brain_putamen_basal |
| rs12453490 | 17 | 40698542 | TUBG2 | ENSG00000037042.8 | 8.328E-9 | 0 | -112781 | gtex_brain_putamen_basal |
| rs56266811 | 17 | 40701951 | TUBG2 | ENSG00000037042.8 | 2.36E-7 | 0 | -109372 | gtex_brain_putamen_basal |
| rs62075837 | 17 | 40702283 | TUBG2 | ENSG00000037042.8 | 2.372E-8 | 0 | -109040 | gtex_brain_putamen_basal |
| rs62075854 | 17 | 40703535 | TUBG2 | ENSG00000037042.8 | 8.157E-9 | 0 | -107788 | gtex_brain_putamen_basal |
| rs2676532 | 17 | 40704008 | TUBG2 | ENSG00000037042.8 | 2.101E-9 | 0 | -107315 | gtex_brain_putamen_basal |
| rs2676531 | 17 | 40704185 | TUBG2 | ENSG00000037042.8 | 2.128E-9 | 0 | -107138 | gtex_brain_putamen_basal |
| rs2830 | 17 | 40704563 | TUBG2 | ENSG00000037042.8 | 3.384E-9 | 0 | -106760 | gtex_brain_putamen_basal |
| rs597255 | 17 | 40705100 | TUBG2 | ENSG00000037042.8 | 2.127E-9 | 0 | -106223 | gtex_brain_putamen_basal |
| rs610166 | 17 | 40705715 | TUBG2 | ENSG00000037042.8 | 2.43E-10 | 0 | -105608 | gtex_brain_putamen_basal |
| rs610177 | 17 | 40705724 | TUBG2 | ENSG00000037042.8 | 2.127E-9 | 0 | -105599 | gtex_brain_putamen_basal |
| rs605059 | 17 | 40706906 | TUBG2 | ENSG00000037042.8 | 2.297E-10 | 0 | -104417 | gtex_brain_putamen_basal |
| rs592389 | 17 | 40707444 | TUBG2 | ENSG00000037042.8 | 2.123E-9 | 0 | -103879 | gtex_brain_putamen_basal |
| rs199711710 | 17 | 40707579 | TUBG2 | ENSG00000037042.8 | 2.823E-7 | 0 | -103744 | gtex_brain_putamen_basal |
| rs72826920 | 17 | 40707580 | TUBG2 | ENSG00000037042.8 | 1.119E-7 | 0 | -103743 | gtex_brain_putamen_basal |
| rs4792976 | 17 | 40710355 | TUBG2 | ENSG00000037042.8 | 1.127E-8 | 0 | -100968 | gtex_brain_putamen_basal |
| rs637627 | 17 | 40710438 | TUBG2 | ENSG00000037042.8 | 6.694E-8 | 0 | -100885 | gtex_brain_putamen_basal |
| rs12602084 | 17 | 40711769 | TUBG2 | ENSG00000037042.8 | 1.069E-8 | 0 | -99554 | gtex_brain_putamen_basal |
| rs608061 | 17 | 40711808 | TUBG2 | ENSG00000037042.8 | 7.125E-10 | 0 | -99515 | gtex_brain_putamen_basal |
| rs629861 | 17 | 40714014 | TUBG2 | ENSG00000037042.8 | 2.005E-9 | 0 | -97309 | gtex_brain_putamen_basal |
| rs615942 | 17 | 40714804 | TUBG2 | ENSG00000037042.8 | 6.887E-10 | 0 | -96519 | gtex_brain_putamen_basal |
| rs666039 | 17 | 40715570 | TUBG2 | ENSG00000037042.8 | 6.862E-10 | 0 | -95753 | gtex_brain_putamen_basal |
| rs598126 | 17 | 40716520 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -94803 | gtex_brain_putamen_basal |
| rs2292755 | 17 | 40719474 | TUBG2 | ENSG00000037042.8 | 1.026E-8 | 0 | -91849 | gtex_brain_putamen_basal |
| rs646174 | 17 | 40720605 | TUBG2 | ENSG00000037042.8 | 2.361E-10 | 0 | -90718 | gtex_brain_putamen_basal |
| rs632758 | 17 | 40721360 | TUBG2 | ENSG00000037042.8 | 1.941E-9 | 0 | -89963 | gtex_brain_putamen_basal |
| rs17671179 | 17 | 40721850 | TUBG2 | ENSG00000037042.8 | 1.056E-7 | 0 | -89473 | gtex_brain_putamen_basal |
| rs2010750 | 17 | 40723391 | TUBG2 | ENSG00000037042.8 | 1.031E-8 | 0 | -87932 | gtex_brain_putamen_basal |
| rs679 | 17 | 40724276 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -87047 | gtex_brain_putamen_basal |
| rs2292752 | 17 | 40725656 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -85667 | gtex_brain_putamen_basal |
| rs2292751 | 17 | 40725799 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -85524 | gtex_brain_putamen_basal |
| rs1004295 | 17 | 40727427 | TUBG2 | ENSG00000037042.8 | 6.835E-10 | 0 | -83896 | gtex_brain_putamen_basal |
| rs878291 | 17 | 40728229 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -83094 | gtex_brain_putamen_basal |
| rs12450136 | 17 | 40730534 | TUBG2 | ENSG00000037042.8 | 1.163E-7 | 0 | -80789 | gtex_brain_putamen_basal |
| rs62078362 | 17 | 40730728 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -80595 | gtex_brain_putamen_basal |
| rs4793244 | 17 | 40730825 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -80498 | gtex_brain_putamen_basal |
| rs8079855 | 17 | 40732698 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -78625 | gtex_brain_putamen_basal |
| rs1517002 | 17 | 40735469 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -75854 | gtex_brain_putamen_basal |
| rs9889580 | 17 | 40737043 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -74280 | gtex_brain_putamen_basal |
| rs4792992 | 17 | 40737117 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -74206 | gtex_brain_putamen_basal |
| rs55985470 | 17 | 40738610 | TUBG2 | ENSG00000037042.8 | 1.056E-7 | 0 | -72713 | gtex_brain_putamen_basal |
| rs8073311 | 17 | 40740277 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -71046 | gtex_brain_putamen_basal |
| rs8066475 | 17 | 40742454 | TUBG2 | ENSG00000037042.8 | 8.139E-10 | 0 | -68869 | gtex_brain_putamen_basal |
| rs4375714 | 17 | 40742683 | TUBG2 | ENSG00000037042.8 | 8.197E-10 | 0 | -68640 | gtex_brain_putamen_basal |
| rs4793253 | 17 | 40744320 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -67003 | gtex_brain_putamen_basal |
| rs62078364 | 17 | 40744908 | TUBG2 | ENSG00000037042.8 | 1.029E-8 | 0 | -66415 | gtex_brain_putamen_basal |
| rs12449341 | 17 | 40745645 | TUBG2 | ENSG00000037042.8 | 1.793E-7 | 0 | -65678 | gtex_brain_putamen_basal |
| rs12938815 | 17 | 40746395 | TUBG2 | ENSG00000037042.8 | 1.434E-9 | 0 | -64928 | gtex_brain_putamen_basal |
| rs4793056 | 17 | 40748737 | TUBG2 | ENSG00000037042.8 | 6.917E-10 | 0 | -62586 | gtex_brain_putamen_basal |
| rs8076672 | 17 | 40749813 | TUBG2 | ENSG00000037042.8 | 1.092E-9 | 0 | -61510 | gtex_brain_putamen_basal |
| rs8077139 | 17 | 40750099 | TUBG2 | ENSG00000037042.8 | 1.602E-9 | 0 | -61224 | gtex_brain_putamen_basal |
| rs7224577 | 17 | 40750648 | TUBG2 | ENSG00000037042.8 | 9.962E-9 | 0 | -60675 | gtex_brain_putamen_basal |
| rs1504154 | 17 | 40751362 | TUBG2 | ENSG00000037042.8 | 8.375E-10 | 0 | -59961 | gtex_brain_putamen_basal |
| rs8068548 | 17 | 40752166 | TUBG2 | ENSG00000037042.8 | 1.755E-10 | 0 | -59157 | gtex_brain_putamen_basal |
| rs9913356 | 17 | 40753332 | TUBG2 | ENSG00000037042.8 | 9.218E-10 | 0 | -57991 | gtex_brain_putamen_basal |
| rs12949175 | 17 | 40753628 | TUBG2 | ENSG00000037042.8 | 2.664E-9 | 0 | -57695 | gtex_brain_putamen_basal |
| rs9901225 | 17 | 40755811 | TUBG2 | ENSG00000037042.8 | 1.173E-9 | 0 | -55512 | gtex_brain_putamen_basal |
| rs4793036 | 17 | 40757564 | TUBG2 | ENSG00000037042.8 | 1.567E-9 | 0 | -53759 | gtex_brain_putamen_basal |
| rs3760389 | 17 | 40760129 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -51194 | gtex_brain_putamen_basal |
| rs9897375 | 17 | 40760875 | TUBG2 | ENSG00000037042.8 | 1.888E-9 | 0 | -50448 | gtex_brain_putamen_basal |
| rs12952983 | 17 | 40763386 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -47937 | gtex_brain_putamen_basal |
| rs66838751 | 17 | 40763855 | TUBG2 | ENSG00000037042.8 | 3.219E-8 | 0 | -47468 | gtex_brain_putamen_basal |
| rs1045710 | 17 | 40766546 | TUBG2 | ENSG00000037042.8 | 4.428E-8 | 0 | -44777 | gtex_brain_putamen_basal |
| rs67071086 | 17 | 40767564 | TUBG2 | ENSG00000037042.8 | 6.341E-10 | 0 | -43759 | gtex_brain_putamen_basal |
| rs9911799 | 17 | 40767688 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -43635 | gtex_brain_putamen_basal |
| rs9674596 | 17 | 40769225 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -42098 | gtex_brain_putamen_basal |
| rs9674578 | 17 | 40769326 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -41997 | gtex_brain_putamen_basal |
| rs4792906 | 17 | 40770091 | TUBG2 | ENSG00000037042.8 | 1.026E-8 | 0 | -41232 | gtex_brain_putamen_basal |
| rs1024091 | 17 | 40771994 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -39329 | gtex_brain_putamen_basal |
| rs11649877 | 17 | 40772397 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -38926 | gtex_brain_putamen_basal |
| rs12452131 | 17 | 40772503 | TUBG2 | ENSG00000037042.8 | 7.905E-8 | 0 | -38820 | gtex_brain_putamen_basal |
| rs12942278 | 17 | 40772870 | TUBG2 | ENSG00000037042.8 | 7.054E-10 | 0 | -38453 | gtex_brain_putamen_basal |
| rs67653642 | 17 | 40775026 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -36297 | gtex_brain_putamen_basal |
| rs11079050 | 17 | 40775433 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -35890 | gtex_brain_putamen_basal |
| rs2102240 | 17 | 40777072 | TUBG2 | ENSG00000037042.8 | 6.257E-10 | 0 | -34251 | gtex_brain_putamen_basal |
| rs2089114 | 17 | 40777251 | TUBG2 | ENSG00000037042.8 | 2.362E-10 | 0 | -34072 | gtex_brain_putamen_basal |
| rs2355377 | 17 | 40777750 | TUBG2 | ENSG00000037042.8 | 1.024E-9 | 0 | -33573 | gtex_brain_putamen_basal |
| rs113343986 | 17 | 40778189 | TUBG2 | ENSG00000037042.8 | 1.045E-8 | 0 | -33134 | gtex_brain_putamen_basal |
| rs4277395 | 17 | 40778768 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -32555 | gtex_brain_putamen_basal |
| rs12953018 | 17 | 40778888 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -32435 | gtex_brain_putamen_basal |
| rs2355372 | 17 | 40779867 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -31456 | gtex_brain_putamen_basal |
| rs11653909 | 17 | 40782447 | TUBG2 | ENSG00000037042.8 | 6.809E-10 | 0 | -28876 | gtex_brain_putamen_basal |
| rs4793005 | 17 | 40784194 | TUBG2 | ENSG00000037042.8 | 2.371E-10 | 0 | -27129 | gtex_brain_putamen_basal |
| rs79898468 | 17 | 40785623 | TUBG2 | ENSG00000037042.8 | 2.133E-7 | 0 | -25700 | gtex_brain_putamen_basal |
| rs12937984 | 17 | 40786248 | TUBG2 | ENSG00000037042.8 | 1.959E-9 | 0 | -25075 | gtex_brain_putamen_basal |
| rs79255880 | 17 | 40788146 | TUBG2 | ENSG00000037042.8 | 3.916E-8 | 0 | -23177 | gtex_brain_putamen_basal |
| rs55950722 | 17 | 40788147 | TUBG2 | ENSG00000037042.8 | 3.911E-8 | 0 | -23176 | gtex_brain_putamen_basal |
| rs12944420 | 17 | 40792710 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -18613 | gtex_brain_putamen_basal |
| rs8075910 | 17 | 40793704 | TUBG2 | ENSG00000037042.8 | 3.968E-9 | 0 | -17619 | gtex_brain_putamen_basal |
| rs9910501 | 17 | 40794280 | TUBG2 | ENSG00000037042.8 | 3.571E-9 | 0 | -17043 | gtex_brain_putamen_basal |
| rs9913172 | 17 | 40794305 | TUBG2 | ENSG00000037042.8 | 9.33E-9 | 0 | -17018 | gtex_brain_putamen_basal |
| rs2089117 | 17 | 40795384 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -15939 | gtex_brain_putamen_basal |
| rs2089118 | 17 | 40795390 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -15933 | gtex_brain_putamen_basal |
| rs4584877 | 17 | 40796311 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -15012 | gtex_brain_putamen_basal |
| rs8079242 | 17 | 40797107 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -14216 | gtex_brain_putamen_basal |
| rs8079396 | 17 | 40797184 | TUBG2 | ENSG00000037042.8 | 6.21E-9 | 0 | -14139 | gtex_brain_putamen_basal |
| rs12603358 | 17 | 40797406 | TUBG2 | ENSG00000037042.8 | 1.036E-8 | 0 | -13917 | gtex_brain_putamen_basal |
| rs4793066 | 17 | 40801475 | TUBG2 | ENSG00000037042.8 | 2.455E-9 | 0 | -9848 | gtex_brain_putamen_basal |
| rs56317044 | 17 | 40802376 | TUBG2 | ENSG00000037042.8 | 1.192E-8 | 0 | -8947 | gtex_brain_putamen_basal |
| rs7221994 | 17 | 40803145 | TUBG2 | ENSG00000037042.8 | 1.188E-8 | 0 | -8178 | gtex_brain_putamen_basal |
| rs12940074 | 17 | 40803294 | TUBG2 | ENSG00000037042.8 | 2.492E-9 | 0 | -8029 | gtex_brain_putamen_basal |
| rs12941229 | 17 | 40803870 | TUBG2 | ENSG00000037042.8 | 1.746E-8 | 0 | -7453 | gtex_brain_putamen_basal |
| rs12940478 | 17 | 40803950 | TUBG2 | ENSG00000037042.8 | 6.65E-9 | 0 | -7373 | gtex_brain_putamen_basal |
| rs4792929 | 17 | 40805777 | TUBG2 | ENSG00000037042.8 | 7.422E-10 | 0 | -5546 | gtex_brain_putamen_basal |
| rs201186320 | 17 | 40805790 | TUBG2 | ENSG00000037042.8 | 2.571E-9 | 0 | -5533 | gtex_brain_putamen_basal |
| rs35441744 | 17 | 40805799 | TUBG2 | ENSG00000037042.8 | 2.628E-10 | 0 | -5524 | gtex_brain_putamen_basal |
| rs4792930 | 17 | 40805844 | TUBG2 | ENSG00000037042.8 | 1.942E-9 | 0 | -5479 | gtex_brain_putamen_basal |
| rs7225102 | 17 | 40807155 | TUBG2 | ENSG00000037042.8 | 1.162E-9 | 0 | -4168 | gtex_brain_putamen_basal |
| rs7225109 | 17 | 40807170 | TUBG2 | ENSG00000037042.8 | 1.159E-9 | 0 | -4153 | gtex_brain_putamen_basal |
| rs7217821 | 17 | 40807341 | TUBG2 | ENSG00000037042.8 | 5.494E-9 | 0 | -3982 | gtex_brain_putamen_basal |
| rs12943352 | 17 | 40808069 | TUBG2 | ENSG00000037042.8 | 1.111E-9 | 0 | -3254 | gtex_brain_putamen_basal |
| rs11871463 | 17 | 40808446 | TUBG2 | ENSG00000037042.8 | 4.986E-9 | 0 | -2877 | gtex_brain_putamen_basal |
| rs1910563 | 17 | 40808838 | TUBG2 | ENSG00000037042.8 | 9.378E-10 | 0 | -2485 | gtex_brain_putamen_basal |
| rs12935869 | 17 | 40809090 | TUBG2 | ENSG00000037042.8 | 8.896E-10 | 0 | -2233 | gtex_brain_putamen_basal |
| rs9898439 | 17 | 40809583 | TUBG2 | ENSG00000037042.8 | 2.756E-9 | 0 | -1740 | gtex_brain_putamen_basal |
| rs9904643 | 17 | 40809723 | TUBG2 | ENSG00000037042.8 | 7.799E-10 | 0 | -1600 | gtex_brain_putamen_basal |
| rs2292750 | 17 | 40811781 | TUBG2 | ENSG00000037042.8 | 2.612E-9 | 0 | 458 | gtex_brain_putamen_basal |
| rs525911 | 17 | 40811919 | TUBG2 | ENSG00000037042.8 | 1.333E-8 | 0 | 596 | gtex_brain_putamen_basal |
| rs526779 | 17 | 40811997 | TUBG2 | ENSG00000037042.8 | 2.716E-10 | 0 | 674 | gtex_brain_putamen_basal |
| rs3835175 | 17 | 40812797 | TUBG2 | ENSG00000037042.8 | 4.6E-7 | 0 | 1474 | gtex_brain_putamen_basal |
| rs3817331 | 17 | 40817448 | TUBG2 | ENSG00000037042.8 | 1.52E-9 | 0 | 6125 | gtex_brain_putamen_basal |
| rs1554227 | 17 | 40818451 | TUBG2 | ENSG00000037042.8 | 3.736E-11 | 0 | 7128 | gtex_brain_putamen_basal |
| rs1046097 | 17 | 40818699 | TUBG2 | ENSG00000037042.8 | 3.462E-10 | 0 | 7376 | gtex_brain_putamen_basal |
| rs2279844 | 17 | 40819809 | TUBG2 | ENSG00000037042.8 | 2.038E-8 | 0 | 8486 | gtex_brain_putamen_basal |
| rs1973520 | 17 | 40821098 | TUBG2 | ENSG00000037042.8 | 4.355E-10 | 0 | 9775 | gtex_brain_putamen_basal |
| rs4793098 | 17 | 40833187 | TUBG2 | ENSG00000037042.8 | 3.376E-10 | 0 | 21864 | gtex_brain_putamen_basal |
| rs12600469 | 17 | 40834073 | TUBG2 | ENSG00000037042.8 | 2.03E-8 | 0 | 22750 | gtex_brain_putamen_basal |
| rs12947031 | 17 | 40834631 | TUBG2 | ENSG00000037042.8 | 5.344E-10 | 0 | 23308 | gtex_brain_putamen_basal |
| rs3760384 | 17 | 40835451 | TUBG2 | ENSG00000037042.8 | 7.829E-11 | 0 | 24128 | gtex_brain_putamen_basal |
| rs4028634 | 17 | 40835649 | TUBG2 | ENSG00000037042.8 | 1.979E-10 | 0 | 24326 | gtex_brain_putamen_basal |
| rs36108420 | 17 | 40835819 | TUBG2 | ENSG00000037042.8 | 1.985E-10 | 0 | 24496 | gtex_brain_putamen_basal |
| rs2271029 | 17 | 40835922 | TUBG2 | ENSG00000037042.8 | 1.52E-9 | 0 | 24599 | gtex_brain_putamen_basal |
| rs9889373 | 17 | 40836975 | TUBG2 | ENSG00000037042.8 | 1.707E-7 | 0 | 25652 | gtex_brain_putamen_basal |
| rs113091594 | 17 | 40838395 | TUBG2 | ENSG00000037042.8 | 9.067E-10 | 0 | 27072 | gtex_brain_putamen_basal |
| rs3826427 | 17 | 40838404 | TUBG2 | ENSG00000037042.8 | 3.244E-9 | 0 | 27081 | gtex_brain_putamen_basal |
| rs3760385 | 17 | 40841906 | TUBG2 | ENSG00000037042.8 | 1.088E-7 | 0 | 30583 | gtex_brain_putamen_basal |
| rs3760386 | 17 | 40842084 | TUBG2 | ENSG00000037042.8 | 1.208E-6 | 0 | 30761 | gtex_brain_putamen_basal |
| rs9895635 | 17 | 40867165 | TUBG2 | ENSG00000037042.8 | 2.829E-6 | 0 | 55842 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| REACTOME CELL CYCLE | 421 | 253 | All SZGR 2.0 genes in this pathway |
| REACTOME CELL CYCLE MITOTIC | 325 | 185 | All SZGR 2.0 genes in this pathway |
| REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | 66 | 43 | All SZGR 2.0 genes in this pathway |
| REACTOME RECRUITMENT OF NUMA TO MITOTIC CENTROSOMES | 10 | 8 | All SZGR 2.0 genes in this pathway |
| REACTOME MITOTIC G2 G2 M PHASES | 81 | 50 | All SZGR 2.0 genes in this pathway |
| PARENT MTOR SIGNALING UP | 567 | 375 | All SZGR 2.0 genes in this pathway |
| BERTUCCI MEDULLARY VS DUCTAL BREAST CANCER DN | 169 | 118 | All SZGR 2.0 genes in this pathway |
| LINDGREN BLADDER CANCER CLUSTER 1 UP | 121 | 71 | All SZGR 2.0 genes in this pathway |
| GAUSSMANN MLL AF4 FUSION TARGETS C UP | 170 | 114 | All SZGR 2.0 genes in this pathway |
| PATIL LIVER CANCER | 747 | 453 | All SZGR 2.0 genes in this pathway |
| BLALOCK ALZHEIMERS DISEASE DN | 1237 | 837 | All SZGR 2.0 genes in this pathway |
| BLALOCK ALZHEIMERS DISEASE INCIPIENT DN | 165 | 106 | All SZGR 2.0 genes in this pathway |
| VANASSE BCL2 TARGETS DN | 74 | 50 | All SZGR 2.0 genes in this pathway |
| HAN SATB1 TARGETS UP | 395 | 249 | All SZGR 2.0 genes in this pathway |
| MEISSNER NPC HCP WITH H3 UNMETHYLATED | 536 | 296 | All SZGR 2.0 genes in this pathway |
| FOSTER KDM1A TARGETS DN | 211 | 119 | All SZGR 2.0 genes in this pathway |