Summary ?
GeneID55527
SymbolFEM1A
SynonymsEPRAP
Descriptionfem-1 homolog a (C. elegans)
ReferenceMIM:613538|HGNC:HGNC:16934|HPRD:16888|
Gene typeprotein-coding
Map location19p13.3
Pascal p-value0.329
Fetal beta-0.516
DMG1 (# studies)
eGeneAnterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Nucleus accumbens basal ganglia
Putamen basal ganglia
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS
DMG:Nishioka_2013Genome-wide DNA methylation analysisThe authors investigated the methylation profiles of DNA in peripheral blood cells from 18 patients with first-episode schizophrenia (FESZ) and from 15 normal controls. 1

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

ProbeChromosomePositionNearest geneP (dis)Beta (dis)FDR (dis)Study
cg26336164194791680FEM1A-0.0220.65DMG:Nishioka_2013

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs7252762194797319FEM1AENSG00000141965.31.156E-70.015591gtex_brain_ba24
rs4807641194787763FEM1AENSG00000141965.34.009E-70-3965gtex_brain_putamen_basal
rs12609188194788791FEM1AENSG00000141965.38.63E-80-2937gtex_brain_putamen_basal
rs11085099194794257FEM1AENSG00000141965.31.727E-702529gtex_brain_putamen_basal
rs201690682194794946FEM1AENSG00000141965.33.074E-803218gtex_brain_putamen_basal
rs201811248194794947FEM1AENSG00000141965.33.122E-803219gtex_brain_putamen_basal
rs8111933194795647FEM1AENSG00000141965.33.519E-903919gtex_brain_putamen_basal
rs7252762194797319FEM1AENSG00000141965.36.87E-905591gtex_brain_putamen_basal
rs62113934194801859FEM1AENSG00000141965.39.523E-8010131gtex_brain_putamen_basal
rs143319456194802424FEM1AENSG00000141965.34.81E-9010696gtex_brain_putamen_basal
rs62113935194802542FEM1AENSG00000141965.32.022E-7010814gtex_brain_putamen_basal
rs8113352194804212FEM1AENSG00000141965.32.075E-7012484gtex_brain_putamen_basal
rs8102626194804524FEM1AENSG00000141965.34.834E-7012796gtex_brain_putamen_basal
rs75348862194805003FEM1AENSG00000141965.34.959E-7013275gtex_brain_putamen_basal
rs62113936194805095FEM1AENSG00000141965.35.131E-7013367gtex_brain_putamen_basal
rs7253085194806381FEM1AENSG00000141965.31.089E-6014653gtex_brain_putamen_basal
rs62113939194806705FEM1AENSG00000141965.31.008E-6014977gtex_brain_putamen_basal
rs62113940194807247FEM1AENSG00000141965.39.553E-7015519gtex_brain_putamen_basal
rs8110678194807893FEM1AENSG00000141965.39.365E-7016165gtex_brain_putamen_basal
rs8100815194808305FEM1AENSG00000141965.34.453E-7016577gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
GenePearson's Correlation Spearman's Correlation
ARVCF0.910.88
PRR140.910.88
MED250.910.88
ZNF4460.900.90
RALGDS0.900.88
TELO20.890.87
GRAMD1A0.890.84
WIZ0.890.87
TOR2A0.890.85
KIAA16020.890.89
Top 10 negatively co-expressed genes
GenePearson's Correlation Spearman's Correlation
C5orf53-0.70-0.70
ACOT13-0.66-0.68
AF347015.27-0.66-0.73
S100B-0.64-0.69
AF347015.31-0.64-0.72
MT-CO2-0.62-0.72
AF347015.21-0.61-0.79
AF347015.33-0.60-0.68
EAF2-0.60-0.66
AF347015.8-0.60-0.71

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
BIDUS METASTASIS UP 214134All SZGR 2.0 genes in this pathway
BENPORATH NANOG TARGETS 988594All SZGR 2.0 genes in this pathway
BENPORATH SOX2 TARGETS 734436All SZGR 2.0 genes in this pathway
BYSTRYKH HEMATOPOIESIS STEM CELL QTL TRANS 882572All SZGR 2.0 genes in this pathway
VIETOR IFRD1 TARGETS 2313All SZGR 2.0 genes in this pathway
CHENG IMPRINTED BY ESTRADIOL 11068All SZGR 2.0 genes in this pathway
ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR DN 354216All SZGR 2.0 genes in this pathway
BOCHKIS FOXA2 TARGETS 425261All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway