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| GeneID |
56143
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| Symbol |
PCDHA5
|
| Synonyms |
CNR6|CNRN6|CNRS6|CRNR6|PCDH-ALPHA5
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| Description |
protocadherin alpha 5 |
| See related |
HGNC:8671|MIM:606311|Ensembl:ENSG00000204965|HPRD:07323| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
5q31 |
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| Gene set name |
Method of gene set |
Evidence |
Info |
| GSMA_I | genome scan meta-analysis | Psr: 0.0032 | | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 | |
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| General Gene Expression (microarray) ? |
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| Gene Expression in Brain Regions (new) |
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| Top co-expressed genes in Brain Regions (new) |
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| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| BLNK | 0.59 | 0.52 | | |
| EVI2B | 0.58 | 0.57 | | |
| SUSD3 | 0.58 | 0.54 | | |
| APBB1IP | 0.58 | 0.57 | | |
| PTPRC | 0.58 | 0.54 | | |
| HCLS1 | 0.57 | 0.55 | | |
| CD74 | 0.57 | 0.50 | | |
| CTSS | 0.56 | 0.53 | | |
| MSR1 | 0.56 | 0.50 | | |
| HLA-DRA | 0.56 | 0.48 | | |
Top 10 negatively co-expressed genes | | SH3BP2 | -0.33 | -0.34 | | |
| SH2B2 | -0.33 | -0.35 | | |
| KIAA1949 | -0.32 | -0.26 | | |
| TUBB2B | -0.30 | -0.30 | | |
| FBN3 | -0.30 | -0.21 | | |
| SH2D2A | -0.30 | -0.36 | | |
| ZBTB12 | -0.30 | -0.17 | | |
| SOX12 | -0.29 | -0.20 | | |
| AL033532.1 | -0.29 | -0.19 | | |
| ISLR2 | -0.29 | -0.13 | | |
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| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005509 | calcium ion binding | IEA | | - |
| GO:0005515 | protein binding | IEA | | - |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0007399 | nervous system development | TAS | neurite (GO term level: 5) | 10380929 |
| GO:0007155 | cell adhesion | TAS | | 10380929 |
| GO:0007156 | homophilic cell adhesion | IEA | | - |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005886 | plasma membrane | IEA | | - |
| GO:0005887 | integral to plasma membrane | TAS | | 10380929 |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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