Gene Page: ATP13A1
Summary ?
| GeneID | 57130 |
| Symbol | ATP13A1 |
| Synonyms | ATP13A|CGI-152 |
| Description | ATPase 13A1 |
| Reference | HGNC:HGNC:24215|Ensembl:ENSG00000105726|HPRD:12501|Vega:OTTHUMG00000153016 |
| Gene type | protein-coding |
| Map location | 19p13.11 |
| Pascal p-value | 1.153E-5 |
| Sherlock p-value | 0.863 |
| eGene | Cerebellar Hemisphere Cerebellum Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs3810444 | chr19 | 19103985 | ATP13A1 | 57130 | 0.09 | cis | ||
| rs769267 | chr19 | 19446935 | ATP13A1 | 57130 | 0.02 | cis | ||
| rs2905421 | chr19 | 19457907 | ATP13A1 | 57130 | 0.05 | cis | ||
| rs10415849 | chr19 | 19505086 | ATP13A1 | 57130 | 0.01 | cis | ||
| rs2965189 | chr19 | 19519517 | ATP13A1 | 57130 | 0.05 | cis | ||
| rs2916074 | chr19 | 19530269 | ATP13A1 | 57130 | 0.04 | cis | ||
| rs8182472 | chr19 | 19539890 | ATP13A1 | 57130 | 0.01 | cis | ||
| rs4808203 | chr19 | 19568658 | ATP13A1 | 57130 | 0.03 | cis | ||
| rs10419912 | chr19 | 19597054 | ATP13A1 | 57130 | 0.03 | cis | ||
| rs4808964 | chr19 | 19603691 | ATP13A1 | 57130 | 0.04 | cis | ||
| rs3794993 | chr19 | 19611549 | ATP13A1 | 57130 | 0.04 | cis | ||
| rs4808967 | chr19 | 19640523 | ATP13A1 | 57130 | 0.15 | cis | ||
| rs3010053 | chr1 | 183816265 | ATP13A1 | 57130 | 0.06 | trans | ||
| rs3010056 | chr1 | 183817583 | ATP13A1 | 57130 | 0.05 | trans | ||
| rs6739145 | chr2 | 171060782 | ATP13A1 | 57130 | 0.01 | trans | ||
| rs740393 | chr2 | 242065497 | ATP13A1 | 57130 | 0.19 | trans | ||
| rs17049383 | chr3 | 8680115 | ATP13A1 | 57130 | 0.19 | trans | ||
| rs9653983 | chr3 | 8681208 | ATP13A1 | 57130 | 0.04 | trans | ||
| rs17069212 | chr3 | 63642960 | ATP13A1 | 57130 | 0.1 | trans | ||
| rs7775174 | chr6 | 138812529 | ATP13A1 | 57130 | 0 | trans | ||
| rs6570240 | chr6 | 138818185 | ATP13A1 | 57130 | 0.02 | trans | ||
| rs17235614 | chr13 | 97953192 | ATP13A1 | 57130 | 9.912E-5 | trans | ||
| rs17111522 | chr14 | 41634403 | ATP13A1 | 57130 | 0.02 | trans | ||
| rs16961340 | chr17 | 17006543 | ATP13A1 | 57130 | 0.01 | trans | ||
| rs12602675 | chr17 | 17116575 | ATP13A1 | 57130 | 0.06 | trans | ||
| rs713792 | chr22 | 30578149 | ATP13A1 | 57130 | 0.08 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| WEST ADRENOCORTICAL TUMOR UP | 294 | 199 | All SZGR 2.0 genes in this pathway |
| YOSHIMURA MAPK8 TARGETS UP | 1305 | 895 | All SZGR 2.0 genes in this pathway |
| MILI PSEUDOPODIA CHEMOTAXIS DN | 457 | 302 | All SZGR 2.0 genes in this pathway |
| MILI PSEUDOPODIA HAPTOTAXIS DN | 668 | 419 | All SZGR 2.0 genes in this pathway |