Gene Page: BAGE
Summary ?
GeneID | 574 |
Symbol | BAGE |
Synonyms | BAGE1|CT2.1 |
Description | B melanoma antigen |
Reference | MIM:605167|HGNC:HGNC:942|HPRD:05523| |
Gene type | protein-coding |
Map location | 21p11.1 not on reference assembly |
Gene in Data Sources
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | Click to show details |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
GNPTAB | 0.89 | 0.91 |
ANKRD13C | 0.89 | 0.88 |
AC020663.1 | 0.89 | 0.87 |
GPHN | 0.89 | 0.88 |
HECTD2 | 0.88 | 0.90 |
USP7 | 0.88 | 0.88 |
C4orf41 | 0.88 | 0.87 |
MAP4K3 | 0.87 | 0.89 |
RABGEF1 | 0.87 | 0.86 |
CSRP2BP | 0.87 | 0.84 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
MT-CO2 | -0.77 | -0.76 |
FXYD1 | -0.77 | -0.74 |
AF347015.33 | -0.76 | -0.72 |
AF347015.31 | -0.76 | -0.75 |
AF347015.21 | -0.75 | -0.73 |
AF347015.8 | -0.74 | -0.74 |
HIGD1B | -0.74 | -0.74 |
MT-CYB | -0.73 | -0.71 |
AF347015.27 | -0.73 | -0.72 |
AF347015.2 | -0.72 | -0.71 |
Section V. Pathway annotation
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
RODRIGUES THYROID CARCINOMA ANAPLASTIC UP | 722 | 443 | All SZGR 2.0 genes in this pathway |
PUJANA BRCA1 PCC NETWORK | 1652 | 1023 | All SZGR 2.0 genes in this pathway |
SHIPP DLBCL CURED VS FATAL DN | 45 | 30 | All SZGR 2.0 genes in this pathway |
KIM ALL DISORDERS OLIGODENDROCYTE NUMBER CORR DN | 36 | 19 | All SZGR 2.0 genes in this pathway |
KIM BIPOLAR DISORDER OLIGODENDROCYTE DENSITY CORR DN | 88 | 59 | All SZGR 2.0 genes in this pathway |
KIM ALL DISORDERS CALB1 CORR DN | 37 | 20 | All SZGR 2.0 genes in this pathway |