Gene Page: CELF6
Summary ?
| GeneID | 60677 |
| Symbol | CELF6 |
| Synonyms | BRUNOL6 |
| Description | CUGBP, Elav-like family member 6 |
| Reference | MIM:612681|HGNC:HGNC:14059|Ensembl:ENSG00000140488|HPRD:10691|Vega:OTTHUMG00000186423 |
| Gene type | protein-coding |
| Map location | 15q24 |
| Pascal p-value | 0.028 |
| Sherlock p-value | 0.767 |
| eGene | Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs10994209 | chr10 | 61877705 | CELF6 | 60677 | 0.19 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| LRFN3 | 0.92 | 0.93 |
| HGS | 0.92 | 0.93 |
| SCAP | 0.92 | 0.92 |
| ZNF653 | 0.92 | 0.93 |
| FZR1 | 0.92 | 0.93 |
| TELO2 | 0.90 | 0.92 |
| GLTPD1 | 0.90 | 0.91 |
| PPAN-P2RY11 | 0.90 | 0.92 |
| MIER2 | 0.90 | 0.90 |
| ATP13A1 | 0.90 | 0.92 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AF347015.31 | -0.73 | -0.75 |
| AF347015.27 | -0.71 | -0.75 |
| MT-CO2 | -0.70 | -0.73 |
| AF347015.21 | -0.70 | -0.79 |
| AF347015.8 | -0.69 | -0.73 |
| AF347015.33 | -0.69 | -0.71 |
| MT-CYB | -0.68 | -0.71 |
| COPZ2 | -0.65 | -0.69 |
| AF347015.15 | -0.64 | -0.69 |
| NOSTRIN | -0.64 | -0.69 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| DAIRKEE TERT TARGETS UP | 380 | 213 | All SZGR 2.0 genes in this pathway |
| IWANAGA CARCINOGENESIS BY KRAS PTEN DN | 353 | 226 | All SZGR 2.0 genes in this pathway |
| LIN NPAS4 TARGETS UP | 163 | 100 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 2ND EGF PULSE ONLY | 1725 | 838 | All SZGR 2.0 genes in this pathway |