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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Gene Page: FNDC3B

Summary

GeneID

64778

Symbol

FNDC3B

Synonyms

DKFZp686D14170|DKFZp762K137|FAD104|FLJ23399|MGC10002|PRO4979|YVTM2421

Description

fibronectin type III domain containing 3B

Locus tag

Gene type

protein-coding

Map location

3q26.31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.604

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005783

endoplasmic reticulum

IDA

18029348

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN	634	384	All SZGR genes in this pathway
HOLLMANN_APOPTOSIS_VIA_CD40_DN	267	178	All SZGR genes in this pathway
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_DN	182	111	All SZGR genes in this pathway
SENGUPTA_NASOPHARYNGEAL_CARCINOMA_WITH_LMP1_UP	408	247	All SZGR genes in this pathway
ZHOU_INFLAMMATORY_RESPONSE_LIVE_UP	485	293	All SZGR genes in this pathway
PUIFFE_INVASION_INHIBITED_BY_ASCITES_DN	145	91	All SZGR genes in this pathway
CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_UP	177	110	All SZGR genes in this pathway
CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN	455	304	All SZGR genes in this pathway
HORIUCHI_WTAP_TARGETS_UP	306	188	All SZGR genes in this pathway
TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_ERYTHROCYTE_UP	157	104	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_2HR_DN	88	53	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_6HR_DN	167	100	All SZGR genes in this pathway
KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN	329	219	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_DN	1375	806	All SZGR genes in this pathway
YANG_BREAST_CANCER_ESR1_LASER_DN	50	38	All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_UP	1037	673	All SZGR genes in this pathway
LIAO_METASTASIS	539	324	All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_12HR_UP	116	79	All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP	283	177	All SZGR genes in this pathway
GEORGES_TARGETS_OF_MIR192_AND_MIR215	893	528	All SZGR genes in this pathway
ROSS_AML_WITH_PML_RARA_FUSION	77	62	All SZGR genes in this pathway
MANALO_HYPOXIA_UP	207	145	All SZGR genes in this pathway
REN_ALVEOLAR_RHABDOMYOSARCOMA_DN	408	274	All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR	544	307	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN	830	547	All SZGR genes in this pathway
YAMAZAKI_TCEB3_TARGETS_UP	175	116	All SZGR genes in this pathway
CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP	103	69	All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_UP	973	570	All SZGR genes in this pathway
SMID_BREAST_CANCER_LUMINAL_B_DN	564	326	All SZGR genes in this pathway
SMID_BREAST_CANCER_BASAL_UP	648	398	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_D_DN	252	155	All SZGR genes in this pathway
VANTVEER_BREAST_CANCER_ESR1_DN	240	153	All SZGR genes in this pathway
HAN_SATB1_TARGETS_DN	442	275	All SZGR genes in this pathway
VERHAAK_GLIOBLASTOMA_MESENCHYMAL	216	130	All SZGR genes in this pathway
CHYLA_CBFA2T3_TARGETS_UP	387	225	All SZGR genes in this pathway
WIERENGA_STAT5A_TARGETS_UP	217	131	All SZGR genes in this pathway
WIERENGA_STAT5A_TARGETS_GROUP1	136	76	All SZGR genes in this pathway
IKEDA_MIR1_TARGETS_UP	53	39	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_UP	116	87	All SZGR genes in this pathway
PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_7	403	240	All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_8D	882	506	All SZGR genes in this pathway
PHONG_TNF_RESPONSE_VIA_P38_PARTIAL	160	106	All SZGR genes in this pathway
RATTENBACHER_BOUND_BY_CELF1	467	251	All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY	1839	928	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1449	1455	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
				hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-1/206	3013	3020	1A,m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-125/351	1452	1459	1A,m8	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	1452	1459	1A,m8	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-129-5p	1918	1924	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	1918	1924	1A	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-142-5p	2485	2491	m8	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-143	1975	1981	m8	hsa-miR-143^brain	UGAGAUGAAGCACUGUAGCUCA
miR-145	184	190	m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-17-5p/20/93.mr/106/519.d	2483	2490	1A,m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-181	2948	2954	m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-182	1915	1921	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-182	1915	1921	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-183	3105	3111	1A	hsa-miR-183	UAUGGCACUGGUAGAAUUCACUG
miR-186	3212	3218	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-186	3212	3218	m8	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-19	2960	2966	1A	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	2960	2966	1A	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-190	3108	3114	1A	hsa-miR-190	UGAUAUGUUUGAUAUAUUAGGU
miR-192/215	1819	1825	m8	hsa-miR-192	CUGACCUAUGAAUUGACAGCC
miR-192/215	1819	1825	m8	hsa-miR-215	AUGACCUAUGAAUUGACAGAC
miR-200bc/429	1850	1856	1A	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
				hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-217	1600	1607	1A,m8	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-25/32/92/363/367	1721	1727	m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
				hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-30-5p	1950	1956	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-34/449	3103	3109	1A	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-365	725	731	m8	hsa-miR-365	UAAUGCCCCUAAAAAUCCUUAU
miR-369-3p	832	838	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	832	838	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-378*	1431	1437	m8	hsa-miR-422b	CUGGACUUGGAGUCAGAAGGCC
miR-378*	1431	1437	m8	hsa-miR-422a	CUGGACUUAGGGUCAGAAGGCC
miR-384	170	177	1A,m8	hsa-miR-384	AUUCCUAGAAAUUGUUCAUA
miR-500	1474	1481	1A,m8	hsa-miR-500	AUGCACCUGGGCAAGGAUUCUG
miR-543	2949	2956	1A,m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-9	1635	1641	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-93.hd/291-3p/294/295/302/372/373/520	2482	2488	m8	hsa-miR-93^brain	AAAGUGCUGUUCGUGCAGGUAG
				hsa-miR-302a	UAAGUGCUUCCAUGUUUUGGUGA
				hsa-miR-302b	UAAGUGCUUCCAUGUUUUAGUAG
				hsa-miR-302c	UAAGUGCUUCCAUGUUUCAGUGG
				hsa-miR-302d	UAAGUGCUUCCAUGUUUGAGUGU
				hsa-miR-372	AAAGUGCUGCGACAUUUGAGCGU
				hsa-miR-373	GAAGUGCUUCGAUUUUGGGGUGU
				hsa-miR-520e	AAAGUGCUUCCUUUUUGAGGG
				hsa-miR-520a	AAAGUGCUUCCCUUUGGACUGU
				hsa-miR-520b	AAAGUGCUUCCUUUUAGAGGG
				hsa-miR-520c	AAAGUGCUUCCUUUUAGAGGGUU
				hsa-miR-520d	AAAGUGCUUCUCUUUGGUGGGUU
miR-96	1915	1921	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC
miR-96	1915	1921	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.