Gene Page: SNRPC
Summary ?
| GeneID | 6631 |
| Symbol | SNRPC |
| Synonyms | U1C|Yhc1 |
| Description | small nuclear ribonucleoprotein polypeptide C |
| Reference | MIM:603522|HGNC:HGNC:11157|HPRD:04630| |
| Gene type | protein-coding |
| Map location | 6p21.31 |
| Pascal p-value | 0.535 |
| Sherlock p-value | 0.237 |
| Fetal beta | 0.536 |
| DMG | 1 (# studies) |
| eGene | Caudate basal ganglia Cortex Frontal Cortex BA9 Hippocampus Nucleus accumbens basal ganglia Putamen basal ganglia Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Nishioka_2013 | Genome-wide DNA methylation analysis | The authors investigated the methylation profiles of DNA in peripheral blood cells from 18 patients with first-episode schizophrenia (FESZ) and from 15 normal controls. | 1 |
| GSMA_I | Genome scan meta-analysis | Psr: 0.033 | |
| GSMA_IIE | Genome scan meta-analysis (European-ancestry samples) | Psr: 0.04433 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg15676488 | 6 | 34725116 | SNRPC | -0.02 | 0.93 | DMG:Nishioka_2013 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs412392 | 6 | 34549699 | SNRPC | ENSG00000124562.5 | 8.218E-9 | 0 | -175484 | gtex_brain_putamen_basal |
| rs1201874 | 6 | 34549810 | SNRPC | ENSG00000124562.5 | 8.184E-9 | 0 | -175373 | gtex_brain_putamen_basal |
| rs1201873 | 6 | 34550657 | SNRPC | ENSG00000124562.5 | 7.685E-9 | 0 | -174526 | gtex_brain_putamen_basal |
| rs188190 | 6 | 34551086 | SNRPC | ENSG00000124562.5 | 4.199E-9 | 0 | -174097 | gtex_brain_putamen_basal |
| rs205286 | 6 | 34551334 | SNRPC | ENSG00000124562.5 | 4.15E-9 | 0 | -173849 | gtex_brain_putamen_basal |
| rs205283 | 6 | 34553048 | SNRPC | ENSG00000124562.5 | 9.614E-7 | 0 | -172135 | gtex_brain_putamen_basal |
| rs205262 | 6 | 34563164 | SNRPC | ENSG00000124562.5 | 2.735E-6 | 0 | -162019 | gtex_brain_putamen_basal |
| rs205260 | 6 | 34563958 | SNRPC | ENSG00000124562.5 | 4.006E-9 | 0 | -161225 | gtex_brain_putamen_basal |
| rs205259 | 6 | 34564066 | SNRPC | ENSG00000124562.5 | 4.09E-9 | 0 | -161117 | gtex_brain_putamen_basal |
| rs205258 | 6 | 34564243 | SNRPC | ENSG00000124562.5 | 4.079E-9 | 0 | -160940 | gtex_brain_putamen_basal |
| rs2814972 | 6 | 34566975 | SNRPC | ENSG00000124562.5 | 4.02E-9 | 0 | -158208 | gtex_brain_putamen_basal |
| rs2262245 | 6 | 34567694 | SNRPC | ENSG00000124562.5 | 4.02E-9 | 0 | -157489 | gtex_brain_putamen_basal |
| rs200798135 | 6 | 34569481 | SNRPC | ENSG00000124562.5 | 3.191E-8 | 0 | -155702 | gtex_brain_putamen_basal |
| rs2235569 | 6 | 34570070 | SNRPC | ENSG00000124562.5 | 1.496E-8 | 0 | -155113 | gtex_brain_putamen_basal |
| rs2235568 | 6 | 34570094 | SNRPC | ENSG00000124562.5 | 1.495E-8 | 0 | -155089 | gtex_brain_putamen_basal |
| rs2814974 | 6 | 34572028 | SNRPC | ENSG00000124562.5 | 1.495E-8 | 0 | -153155 | gtex_brain_putamen_basal |
| rs2814975 | 6 | 34573213 | SNRPC | ENSG00000124562.5 | 1.565E-8 | 0 | -151970 | gtex_brain_putamen_basal |
| rs57434246 | 6 | 34575426 | SNRPC | ENSG00000124562.5 | 1.494E-8 | 0 | -149757 | gtex_brain_putamen_basal |
| rs2814976 | 6 | 34576237 | SNRPC | ENSG00000124562.5 | 1.496E-8 | 0 | -148946 | gtex_brain_putamen_basal |
| rs2814978 | 6 | 34577776 | SNRPC | ENSG00000124562.5 | 1.006E-8 | 0 | -147407 | gtex_brain_putamen_basal |
| rs2814979 | 6 | 34578425 | SNRPC | ENSG00000124562.5 | 3.815E-9 | 0 | -146758 | gtex_brain_putamen_basal |
| rs2744974 | 6 | 34579431 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -145752 | gtex_brain_putamen_basal |
| rs2744973 | 6 | 34580221 | SNRPC | ENSG00000124562.5 | 5.108E-9 | 0 | -144962 | gtex_brain_putamen_basal |
| rs2814981 | 6 | 34581055 | SNRPC | ENSG00000124562.5 | 3.807E-9 | 0 | -144128 | gtex_brain_putamen_basal |
| rs2744968 | 6 | 34584951 | SNRPC | ENSG00000124562.5 | 3.243E-6 | 0 | -140232 | gtex_brain_putamen_basal |
| rs2744966 | 6 | 34585931 | SNRPC | ENSG00000124562.5 | 3.217E-6 | 0 | -139252 | gtex_brain_putamen_basal |
| rs2744963 | 6 | 34592731 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -132452 | gtex_brain_putamen_basal |
| rs2744962 | 6 | 34594440 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -130743 | gtex_brain_putamen_basal |
| rs2263329 | 6 | 34595543 | SNRPC | ENSG00000124562.5 | 1.327E-8 | 0 | -129640 | gtex_brain_putamen_basal |
| rs2814984 | 6 | 34597513 | SNRPC | ENSG00000124562.5 | 3.809E-9 | 0 | -127670 | gtex_brain_putamen_basal |
| rs398094093 | 6 | 34599738 | SNRPC | ENSG00000124562.5 | 2.175E-9 | 0 | -125445 | gtex_brain_putamen_basal |
| rs76046500 | 6 | 34601031 | SNRPC | ENSG00000124562.5 | 3.152E-6 | 0 | -124152 | gtex_brain_putamen_basal |
| rs4618513 | 6 | 34601825 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -123358 | gtex_brain_putamen_basal |
| rs66760501 | 6 | 34602847 | SNRPC | ENSG00000124562.5 | 1.663E-8 | 0 | -122336 | gtex_brain_putamen_basal |
| rs2492862 | 6 | 34603303 | SNRPC | ENSG00000124562.5 | 2.936E-6 | 0 | -121880 | gtex_brain_putamen_basal |
| rs2814987 | 6 | 34605145 | SNRPC | ENSG00000124562.5 | 3.866E-9 | 0 | -120038 | gtex_brain_putamen_basal |
| rs2814988 | 6 | 34608480 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -116703 | gtex_brain_putamen_basal |
| rs2814989 | 6 | 34608640 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -116543 | gtex_brain_putamen_basal |
| rs9469835 | 6 | 34611001 | SNRPC | ENSG00000124562.5 | 9.517E-7 | 0 | -114182 | gtex_brain_putamen_basal |
| rs2814990 | 6 | 34612379 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -112804 | gtex_brain_putamen_basal |
| rs34094891 | 6 | 34614822 | SNRPC | ENSG00000124562.5 | 3.518E-9 | 0 | -110361 | gtex_brain_putamen_basal |
| rs2814991 | 6 | 34615443 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -109740 | gtex_brain_putamen_basal |
| rs2744959 | 6 | 34616654 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -108529 | gtex_brain_putamen_basal |
| rs2814992 | 6 | 34617144 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -108039 | gtex_brain_putamen_basal |
| rs2744957 | 6 | 34618516 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -106667 | gtex_brain_putamen_basal |
| rs2814995 | 6 | 34621171 | SNRPC | ENSG00000124562.5 | 4.214E-9 | 0 | -104012 | gtex_brain_putamen_basal |
| rs2252551 | 6 | 34622676 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -102507 | gtex_brain_putamen_basal |
| rs2814998 | 6 | 34625211 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -99972 | gtex_brain_putamen_basal |
| rs2744952 | 6 | 34627437 | SNRPC | ENSG00000124562.5 | 2.663E-6 | 0 | -97746 | gtex_brain_putamen_basal |
| rs2744949 | 6 | 34633862 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -91321 | gtex_brain_putamen_basal |
| rs2815000 | 6 | 34634263 | SNRPC | ENSG00000124562.5 | 3.927E-6 | 0 | -90920 | gtex_brain_putamen_basal |
| rs2815001 | 6 | 34634353 | SNRPC | ENSG00000124562.5 | 3.93E-9 | 0 | -90830 | gtex_brain_putamen_basal |
| rs2744948 | 6 | 34634953 | SNRPC | ENSG00000124562.5 | 3.093E-6 | 0 | -90230 | gtex_brain_putamen_basal |
| rs2815003 | 6 | 34635809 | SNRPC | ENSG00000124562.5 | 3.126E-6 | 0 | -89374 | gtex_brain_putamen_basal |
| rs2815004 | 6 | 34636268 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -88915 | gtex_brain_putamen_basal |
| rs2395598 | 6 | 34640686 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -84497 | gtex_brain_putamen_basal |
| rs2395599 | 6 | 34641415 | SNRPC | ENSG00000124562.5 | 3.812E-9 | 0 | -83768 | gtex_brain_putamen_basal |
| rs2744943 | 6 | 34643179 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -82004 | gtex_brain_putamen_basal |
| rs2814942 | 6 | 34644261 | SNRPC | ENSG00000124562.5 | 3.543E-9 | 0 | -80922 | gtex_brain_putamen_basal |
| rs6937784 | 6 | 34644276 | SNRPC | ENSG00000124562.5 | 3.543E-9 | 0 | -80907 | gtex_brain_putamen_basal |
| rs2064253 | 6 | 34645322 | SNRPC | ENSG00000124562.5 | 2.814E-6 | 0 | -79861 | gtex_brain_putamen_basal |
| rs2744941 | 6 | 34646917 | SNRPC | ENSG00000124562.5 | 1.628E-8 | 0 | -78266 | gtex_brain_putamen_basal |
| rs2814945 | 6 | 34647978 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -77205 | gtex_brain_putamen_basal |
| rs2814946 | 6 | 34651180 | SNRPC | ENSG00000124562.5 | 3.081E-8 | 0 | -74003 | gtex_brain_putamen_basal |
| rs67229195 | 6 | 34651290 | SNRPC | ENSG00000124562.5 | 4.574E-6 | 0 | -73893 | gtex_brain_putamen_basal |
| rs201444562 | 6 | 34651302 | SNRPC | ENSG00000124562.5 | 6.845E-8 | 0 | -73881 | gtex_brain_putamen_basal |
| rs2814947 | 6 | 34653268 | SNRPC | ENSG00000124562.5 | 2.141E-8 | 0 | -71915 | gtex_brain_putamen_basal |
| rs2744961 | 6 | 34655000 | SNRPC | ENSG00000124562.5 | 1.265E-8 | 0 | -70183 | gtex_brain_putamen_basal |
| rs2744953 | 6 | 34656462 | SNRPC | ENSG00000124562.5 | 4.148E-6 | 0 | -68721 | gtex_brain_putamen_basal |
| rs2814949 | 6 | 34656722 | SNRPC | ENSG00000124562.5 | 4.914E-8 | 0 | -68461 | gtex_brain_putamen_basal |
| rs2744944 | 6 | 34658080 | SNRPC | ENSG00000124562.5 | 1.26E-8 | 0 | -67103 | gtex_brain_putamen_basal |
| rs2814950 | 6 | 34658363 | SNRPC | ENSG00000124562.5 | 3.115E-6 | 0 | -66820 | gtex_brain_putamen_basal |
| rs7771778 | 6 | 34660324 | SNRPC | ENSG00000124562.5 | 3.786E-9 | 0 | -64859 | gtex_brain_putamen_basal |
| rs199510489 | 6 | 34661448 | SNRPC | ENSG00000124562.5 | 3.472E-6 | 0 | -63735 | gtex_brain_putamen_basal |
| rs3800458 | 6 | 34663487 | SNRPC | ENSG00000124562.5 | 9.312E-7 | 0 | -61696 | gtex_brain_putamen_basal |
| rs3800456 | 6 | 34664207 | SNRPC | ENSG00000124562.5 | 3.106E-6 | 0 | -60976 | gtex_brain_putamen_basal |
| rs7742652 | 6 | 34667075 | SNRPC | ENSG00000124562.5 | 3.778E-9 | 0 | -58108 | gtex_brain_putamen_basal |
| rs9368829 | 6 | 34668442 | SNRPC | ENSG00000124562.5 | 3.985E-6 | 0 | -56741 | gtex_brain_putamen_basal |
| rs9368830 | 6 | 34668635 | SNRPC | ENSG00000124562.5 | 1.644E-8 | 0 | -56548 | gtex_brain_putamen_basal |
| rs9380451 | 6 | 34668694 | SNRPC | ENSG00000124562.5 | 3.107E-6 | 0 | -56489 | gtex_brain_putamen_basal |
| rs201163058 | 6 | 34669134 | SNRPC | ENSG00000124562.5 | 4.559E-10 | 0 | -56049 | gtex_brain_putamen_basal |
| rs58655892 | 6 | 34669148 | SNRPC | ENSG00000124562.5 | 3.266E-6 | 0 | -56035 | gtex_brain_putamen_basal |
| rs9380454 | 6 | 34669384 | SNRPC | ENSG00000124562.5 | 4.044E-9 | 0 | -55799 | gtex_brain_putamen_basal |
| rs7759128 | 6 | 34670395 | SNRPC | ENSG00000124562.5 | 2.869E-7 | 0 | -54788 | gtex_brain_putamen_basal |
| rs7741398 | 6 | 34670623 | SNRPC | ENSG00000124562.5 | 3.92E-9 | 0 | -54560 | gtex_brain_putamen_basal |
| rs7763987 | 6 | 34670975 | SNRPC | ENSG00000124562.5 | 3.777E-9 | 0 | -54208 | gtex_brain_putamen_basal |
| rs9296126 | 6 | 34672642 | SNRPC | ENSG00000124562.5 | 3.106E-6 | 0 | -52541 | gtex_brain_putamen_basal |
| rs9348950 | 6 | 34673678 | SNRPC | ENSG00000124562.5 | 2.816E-9 | 0 | -51505 | gtex_brain_putamen_basal |
| rs9357181 | 6 | 34673833 | SNRPC | ENSG00000124562.5 | 3.778E-9 | 0 | -51350 | gtex_brain_putamen_basal |
| rs7752237 | 6 | 34674316 | SNRPC | ENSG00000124562.5 | 3.11E-6 | 0 | -50867 | gtex_brain_putamen_basal |
| rs4713823 | 6 | 34676130 | SNRPC | ENSG00000124562.5 | 2.436E-6 | 0 | -49053 | gtex_brain_putamen_basal |
| rs201659735 | 6 | 34677141 | SNRPC | ENSG00000124562.5 | 3.141E-6 | 0 | -48042 | gtex_brain_putamen_basal |
| rs149313131 | 6 | 34679433 | SNRPC | ENSG00000124562.5 | 1.678E-8 | 0 | -45750 | gtex_brain_putamen_basal |
| rs369969803 | 6 | 34679437 | SNRPC | ENSG00000124562.5 | 4.389E-9 | 0 | -45746 | gtex_brain_putamen_basal |
| rs9368832 | 6 | 34679587 | SNRPC | ENSG00000124562.5 | 3.773E-9 | 0 | -45596 | gtex_brain_putamen_basal |
| rs9366862 | 6 | 34679935 | SNRPC | ENSG00000124562.5 | 4.737E-8 | 0 | -45248 | gtex_brain_putamen_basal |
| rs12201281 | 6 | 34681091 | SNRPC | ENSG00000124562.5 | 3.798E-9 | 0 | -44092 | gtex_brain_putamen_basal |
| rs7772600 | 6 | 34681811 | SNRPC | ENSG00000124562.5 | 3.124E-6 | 0 | -43372 | gtex_brain_putamen_basal |
| rs9366863 | 6 | 34688946 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -36237 | gtex_brain_putamen_basal |
| rs10947521 | 6 | 34689377 | SNRPC | ENSG00000124562.5 | 3.986E-9 | 0 | -35806 | gtex_brain_putamen_basal |
| rs9380455 | 6 | 34690778 | SNRPC | ENSG00000124562.5 | 3.796E-8 | 0 | -34405 | gtex_brain_putamen_basal |
| rs6929567 | 6 | 34692735 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -32448 | gtex_brain_putamen_basal |
| rs10807141 | 6 | 34693111 | SNRPC | ENSG00000124562.5 | 6.771E-9 | 0 | -32072 | gtex_brain_putamen_basal |
| rs10738078 | 6 | 34693917 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -31266 | gtex_brain_putamen_basal |
| rs4513788 | 6 | 34694779 | SNRPC | ENSG00000124562.5 | 1.15E-8 | 0 | -30404 | gtex_brain_putamen_basal |
| rs2814951 | 6 | 34695081 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -30102 | gtex_brain_putamen_basal |
| rs7758082 | 6 | 34696700 | SNRPC | ENSG00000124562.5 | 5.475E-8 | 0 | -28483 | gtex_brain_putamen_basal |
| rs13206387 | 6 | 34696792 | SNRPC | ENSG00000124562.5 | 1.567E-7 | 0 | -28391 | gtex_brain_putamen_basal |
| rs2814952 | 6 | 34697379 | SNRPC | ENSG00000124562.5 | 2.321E-8 | 0 | -27804 | gtex_brain_putamen_basal |
| rs2814953 | 6 | 34697767 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -27416 | gtex_brain_putamen_basal |
| rs2814955 | 6 | 34698970 | SNRPC | ENSG00000124562.5 | 1.324E-8 | 0 | -26213 | gtex_brain_putamen_basal |
| rs2764210 | 6 | 34699049 | SNRPC | ENSG00000124562.5 | 4.956E-8 | 0 | -26134 | gtex_brain_putamen_basal |
| rs2814956 | 6 | 34699109 | SNRPC | ENSG00000124562.5 | 7.122E-9 | 0 | -26074 | gtex_brain_putamen_basal |
| rs397722291 | 6 | 34701981 | SNRPC | ENSG00000124562.5 | 7.74E-8 | 0 | -23202 | gtex_brain_putamen_basal |
| rs2814957 | 6 | 34702689 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -22494 | gtex_brain_putamen_basal |
| rs2814958 | 6 | 34702958 | SNRPC | ENSG00000124562.5 | 4.912E-9 | 0 | -22225 | gtex_brain_putamen_basal |
| rs2477507 | 6 | 34703599 | SNRPC | ENSG00000124562.5 | 3.748E-9 | 0 | -21584 | gtex_brain_putamen_basal |
| rs2477508 | 6 | 34703695 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -21488 | gtex_brain_putamen_basal |
| rs2764211 | 6 | 34704613 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -20570 | gtex_brain_putamen_basal |
| rs2764197 | 6 | 34705055 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -20128 | gtex_brain_putamen_basal |
| rs2492860 | 6 | 34705530 | SNRPC | ENSG00000124562.5 | 2.151E-7 | 0 | -19653 | gtex_brain_putamen_basal |
| rs2814959 | 6 | 34705947 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -19236 | gtex_brain_putamen_basal |
| rs2764198 | 6 | 34706128 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -19055 | gtex_brain_putamen_basal |
| rs6940215 | 6 | 34706358 | SNRPC | ENSG00000124562.5 | 3.445E-6 | 0 | -18825 | gtex_brain_putamen_basal |
| rs2814961 | 6 | 34706951 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -18232 | gtex_brain_putamen_basal |
| rs2764201 | 6 | 34708850 | SNRPC | ENSG00000124562.5 | 2.384E-6 | 0 | -16333 | gtex_brain_putamen_basal |
| rs2814963 | 6 | 34708908 | SNRPC | ENSG00000124562.5 | 9.006E-8 | 0 | -16275 | gtex_brain_putamen_basal |
| rs398110017 | 6 | 34709796 | SNRPC | ENSG00000124562.5 | 4.813E-9 | 0 | -15387 | gtex_brain_putamen_basal |
| rs9462006 | 6 | 34710327 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -14856 | gtex_brain_putamen_basal |
| rs2492861 | 6 | 34710934 | SNRPC | ENSG00000124562.5 | 1.208E-8 | 0 | -14249 | gtex_brain_putamen_basal |
| rs398001125 | 6 | 34711590 | SNRPC | ENSG00000124562.5 | 3.53E-9 | 0 | -13593 | gtex_brain_putamen_basal |
| rs2814966 | 6 | 34712232 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | -12951 | gtex_brain_putamen_basal |
| rs2814967 | 6 | 34712838 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | -12345 | gtex_brain_putamen_basal |
| rs2764206 | 6 | 34712900 | SNRPC | ENSG00000124562.5 | 4.437E-9 | 0 | -12283 | gtex_brain_putamen_basal |
| rs2764207 | 6 | 34712998 | SNRPC | ENSG00000124562.5 | 1.046E-9 | 0 | -12185 | gtex_brain_putamen_basal |
| rs2814968 | 6 | 34713138 | SNRPC | ENSG00000124562.5 | 1.048E-9 | 0 | -12045 | gtex_brain_putamen_basal |
| rs2814969 | 6 | 34713399 | SNRPC | ENSG00000124562.5 | 5.943E-10 | 0 | -11784 | gtex_brain_putamen_basal |
| rs2814970 | 6 | 34713500 | SNRPC | ENSG00000124562.5 | 4.445E-9 | 0 | -11683 | gtex_brain_putamen_basal |
| rs2814971 | 6 | 34714209 | SNRPC | ENSG00000124562.5 | 4.445E-9 | 0 | -10974 | gtex_brain_putamen_basal |
| rs2764208 | 6 | 34714322 | SNRPC | ENSG00000124562.5 | 1.053E-9 | 0 | -10861 | gtex_brain_putamen_basal |
| rs7755982 | 6 | 34715297 | SNRPC | ENSG00000124562.5 | 1.06E-9 | 0 | -9886 | gtex_brain_putamen_basal |
| rs7756009 | 6 | 34715395 | SNRPC | ENSG00000124562.5 | 1.06E-9 | 0 | -9788 | gtex_brain_putamen_basal |
| rs912716 | 6 | 34715761 | SNRPC | ENSG00000124562.5 | 4.454E-9 | 0 | -9422 | gtex_brain_putamen_basal |
| rs3734268 | 6 | 34716028 | SNRPC | ENSG00000124562.5 | 1.064E-9 | 0 | -9155 | gtex_brain_putamen_basal |
| rs9462009 | 6 | 34716330 | SNRPC | ENSG00000124562.5 | 4.454E-9 | 0 | -8853 | gtex_brain_putamen_basal |
| rs9462010 | 6 | 34716605 | SNRPC | ENSG00000124562.5 | 7.709E-9 | 0 | -8578 | gtex_brain_putamen_basal |
| rs9462011 | 6 | 34716985 | SNRPC | ENSG00000124562.5 | 4.713E-10 | 0 | -8198 | gtex_brain_putamen_basal |
| rs59162539 | 6 | 34717783 | SNRPC | ENSG00000124562.5 | 2.254E-7 | 0 | -7400 | gtex_brain_putamen_basal |
| rs9296127 | 6 | 34719628 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | -5555 | gtex_brain_putamen_basal |
| rs9469857 | 6 | 34719793 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | -5390 | gtex_brain_putamen_basal |
| rs9469858 | 6 | 34720211 | SNRPC | ENSG00000124562.5 | 1.738E-7 | 0 | -4972 | gtex_brain_putamen_basal |
| rs6907244 | 6 | 34720411 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | -4772 | gtex_brain_putamen_basal |
| rs6457787 | 6 | 34721041 | SNRPC | ENSG00000124562.5 | 1.09E-6 | 0 | -4142 | gtex_brain_putamen_basal |
| rs6457788 | 6 | 34721067 | SNRPC | ENSG00000124562.5 | 8.265E-9 | 0 | -4116 | gtex_brain_putamen_basal |
| rs6457789 | 6 | 34721128 | SNRPC | ENSG00000124562.5 | 8.265E-9 | 0 | -4055 | gtex_brain_putamen_basal |
| rs7755926 | 6 | 34722574 | SNRPC | ENSG00000124562.5 | 3.845E-9 | 0 | -2609 | gtex_brain_putamen_basal |
| rs7756405 | 6 | 34722659 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | -2524 | gtex_brain_putamen_basal |
| rs9469859 | 6 | 34722902 | SNRPC | ENSG00000124562.5 | 1.499E-8 | 0 | -2281 | gtex_brain_putamen_basal |
| rs59247079 | 6 | 34725658 | SNRPC | ENSG00000124562.5 | 2.501E-9 | 0 | 475 | gtex_brain_putamen_basal |
| rs9469861 | 6 | 34726136 | SNRPC | ENSG00000124562.5 | 4.569E-10 | 0 | 953 | gtex_brain_putamen_basal |
| rs13198620 | 6 | 34726361 | SNRPC | ENSG00000124562.5 | 3.771E-8 | 0 | 1178 | gtex_brain_putamen_basal |
| rs7341249 | 6 | 34726815 | SNRPC | ENSG00000124562.5 | 3.874E-6 | 0 | 1632 | gtex_brain_putamen_basal |
| rs7341253 | 6 | 34726838 | SNRPC | ENSG00000124562.5 | 1.041E-8 | 0 | 1655 | gtex_brain_putamen_basal |
| rs7341267 | 6 | 34727031 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 1848 | gtex_brain_putamen_basal |
| rs7759227 | 6 | 34728230 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 3047 | gtex_brain_putamen_basal |
| rs7341329 | 6 | 34729162 | SNRPC | ENSG00000124562.5 | 3.397E-9 | 0 | 3979 | gtex_brain_putamen_basal |
| rs9469862 | 6 | 34729848 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 4665 | gtex_brain_putamen_basal |
| rs11965761 | 6 | 34731225 | SNRPC | ENSG00000124562.5 | 7.635E-10 | 0 | 6042 | gtex_brain_putamen_basal |
| rs148024643 | 6 | 34731649 | SNRPC | ENSG00000124562.5 | 3.64E-7 | 0 | 6466 | gtex_brain_putamen_basal |
| rs137931729 | 6 | 34731686 | SNRPC | ENSG00000124562.5 | 2.357E-8 | 0 | 6503 | gtex_brain_putamen_basal |
| rs7762644 | 6 | 34732145 | SNRPC | ENSG00000124562.5 | 1.555E-8 | 0 | 6962 | gtex_brain_putamen_basal |
| rs28675115 | 6 | 34732514 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 7331 | gtex_brain_putamen_basal |
| rs7739766 | 6 | 34733362 | SNRPC | ENSG00000124562.5 | 6.177E-9 | 0 | 8179 | gtex_brain_putamen_basal |
| rs7763224 | 6 | 34734239 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 9056 | gtex_brain_putamen_basal |
| rs3798352 | 6 | 34734809 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 9626 | gtex_brain_putamen_basal |
| rs6940395 | 6 | 34736553 | SNRPC | ENSG00000124562.5 | 2.099E-8 | 0 | 11370 | gtex_brain_putamen_basal |
| rs7741437 | 6 | 34737553 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 12370 | gtex_brain_putamen_basal |
| rs2038841 | 6 | 34738203 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 13020 | gtex_brain_putamen_basal |
| rs9469863 | 6 | 34739649 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 14466 | gtex_brain_putamen_basal |
| rs9462015 | 6 | 34739726 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 14543 | gtex_brain_putamen_basal |
| rs9394248 | 6 | 34739875 | SNRPC | ENSG00000124562.5 | 1.074E-6 | 0 | 14692 | gtex_brain_putamen_basal |
| rs35597448 | 6 | 34741700 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 16517 | gtex_brain_putamen_basal |
| rs1998702 | 6 | 34741917 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 16734 | gtex_brain_putamen_basal |
| rs9469866 | 6 | 34742248 | SNRPC | ENSG00000124562.5 | 4.263E-6 | 0 | 17065 | gtex_brain_putamen_basal |
| rs9469867 | 6 | 34742449 | SNRPC | ENSG00000124562.5 | 5.235E-7 | 0 | 17266 | gtex_brain_putamen_basal |
| rs6906759 | 6 | 34742990 | SNRPC | ENSG00000124562.5 | 3.56E-9 | 0 | 17807 | gtex_brain_putamen_basal |
| rs375038003 | 6 | 34743432 | SNRPC | ENSG00000124562.5 | 4.976E-10 | 0 | 18249 | gtex_brain_putamen_basal |
| rs398094094 | 6 | 34743617 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 18434 | gtex_brain_putamen_basal |
| rs144904389 | 6 | 34743865 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 18682 | gtex_brain_putamen_basal |
| rs71000097 | 6 | 34743866 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 18683 | gtex_brain_putamen_basal |
| rs9469868 | 6 | 34744014 | SNRPC | ENSG00000124562.5 | 2.697E-7 | 0 | 18831 | gtex_brain_putamen_basal |
| rs9469869 | 6 | 34744134 | SNRPC | ENSG00000124562.5 | 2.02E-7 | 0 | 18951 | gtex_brain_putamen_basal |
| rs9469870 | 6 | 34744349 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 19166 | gtex_brain_putamen_basal |
| rs9469871 | 6 | 34745007 | SNRPC | ENSG00000124562.5 | 2.723E-9 | 0 | 19824 | gtex_brain_putamen_basal |
| rs9296128 | 6 | 34745682 | SNRPC | ENSG00000124562.5 | 7.587E-8 | 0 | 20499 | gtex_brain_putamen_basal |
| rs9469872 | 6 | 34745703 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 20520 | gtex_brain_putamen_basal |
| rs2038840 | 6 | 34746151 | SNRPC | ENSG00000124562.5 | 5.525E-7 | 0 | 20968 | gtex_brain_putamen_basal |
| rs11759151 | 6 | 34747603 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 22420 | gtex_brain_putamen_basal |
| rs9462018 | 6 | 34748728 | SNRPC | ENSG00000124562.5 | 3.198E-7 | 0 | 23545 | gtex_brain_putamen_basal |
| rs9462019 | 6 | 34748730 | SNRPC | ENSG00000124562.5 | 3.085E-7 | 0 | 23547 | gtex_brain_putamen_basal |
| rs35285078 | 6 | 34748893 | SNRPC | ENSG00000124562.5 | 2.347E-6 | 0 | 23710 | gtex_brain_putamen_basal |
| rs6900188 | 6 | 34749008 | SNRPC | ENSG00000124562.5 | 9.034E-10 | 0 | 23825 | gtex_brain_putamen_basal |
| rs6899938 | 6 | 34749113 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 23930 | gtex_brain_putamen_basal |
| rs6900847 | 6 | 34749532 | SNRPC | ENSG00000124562.5 | 1.566E-6 | 0 | 24349 | gtex_brain_putamen_basal |
| rs9689160 | 6 | 34749849 | SNRPC | ENSG00000124562.5 | 2.698E-7 | 0 | 24666 | gtex_brain_putamen_basal |
| rs6930036 | 6 | 34750728 | SNRPC | ENSG00000124562.5 | 8.632E-9 | 0 | 25545 | gtex_brain_putamen_basal |
| rs9462020 | 6 | 34751265 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 26082 | gtex_brain_putamen_basal |
| rs58843872 | 6 | 34752010 | SNRPC | ENSG00000124562.5 | 6.811E-9 | 0 | 26827 | gtex_brain_putamen_basal |
| rs58671447 | 6 | 34752351 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 27168 | gtex_brain_putamen_basal |
| rs9689516 | 6 | 34752678 | SNRPC | ENSG00000124562.5 | 1.585E-8 | 0 | 27495 | gtex_brain_putamen_basal |
| rs9689820 | 6 | 34752963 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 27780 | gtex_brain_putamen_basal |
| rs112782669 | 6 | 34753274 | SNRPC | ENSG00000124562.5 | 2.698E-7 | 0 | 28091 | gtex_brain_putamen_basal |
| rs200893385 | 6 | 34753277 | SNRPC | ENSG00000124562.5 | 2.698E-7 | 0 | 28094 | gtex_brain_putamen_basal |
| rs34493158 | 6 | 34753339 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 28156 | gtex_brain_putamen_basal |
| rs9469878 | 6 | 34756761 | SNRPC | ENSG00000124562.5 | 2.611E-7 | 0 | 31578 | gtex_brain_putamen_basal |
| rs9469879 | 6 | 34756909 | SNRPC | ENSG00000124562.5 | 1.288E-9 | 0 | 31726 | gtex_brain_putamen_basal |
| rs9469880 | 6 | 34757256 | SNRPC | ENSG00000124562.5 | 6.836E-7 | 0 | 32073 | gtex_brain_putamen_basal |
| rs9469882 | 6 | 34757810 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 32627 | gtex_brain_putamen_basal |
| rs9469883 | 6 | 34758627 | SNRPC | ENSG00000124562.5 | 4.751E-10 | 0 | 33444 | gtex_brain_putamen_basal |
| rs9462021 | 6 | 34758640 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 33457 | gtex_brain_putamen_basal |
| rs9469884 | 6 | 34758703 | SNRPC | ENSG00000124562.5 | 4.536E-10 | 0 | 33520 | gtex_brain_putamen_basal |
| rs9469885 | 6 | 34758716 | SNRPC | ENSG00000124562.5 | 3.702E-9 | 0 | 33533 | gtex_brain_putamen_basal |
| rs9469886 | 6 | 34758824 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 33641 | gtex_brain_putamen_basal |
| rs9469887 | 6 | 34758940 | SNRPC | ENSG00000124562.5 | 1.288E-8 | 0 | 33757 | gtex_brain_putamen_basal |
| rs13215181 | 6 | 34759881 | SNRPC | ENSG00000124562.5 | 7.446E-9 | 0 | 34698 | gtex_brain_putamen_basal |
| rs6934662 | 6 | 34759884 | SNRPC | ENSG00000124562.5 | 2.591E-8 | 0 | 34701 | gtex_brain_putamen_basal |
| rs6457791 | 6 | 34759954 | SNRPC | ENSG00000124562.5 | 4.099E-7 | 0 | 34771 | gtex_brain_putamen_basal |
| rs7769961 | 6 | 34760162 | SNRPC | ENSG00000124562.5 | 3.912E-10 | 0 | 34979 | gtex_brain_putamen_basal |
| rs7769820 | 6 | 34760228 | SNRPC | ENSG00000124562.5 | 1.22E-9 | 0 | 35045 | gtex_brain_putamen_basal |
| rs7752060 | 6 | 34760325 | SNRPC | ENSG00000124562.5 | 3.801E-9 | 0 | 35142 | gtex_brain_putamen_basal |
| rs7752522 | 6 | 34760583 | SNRPC | ENSG00000124562.5 | 1.479E-8 | 0 | 35400 | gtex_brain_putamen_basal |
| rs11757370 | 6 | 34760736 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 35553 | gtex_brain_putamen_basal |
| rs11755420 | 6 | 34760956 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 35773 | gtex_brain_putamen_basal |
| rs9462022 | 6 | 34761684 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 36501 | gtex_brain_putamen_basal |
| rs6942040 | 6 | 34761809 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 36626 | gtex_brain_putamen_basal |
| rs71686659 | 6 | 34762004 | SNRPC | ENSG00000124562.5 | 4.76E-10 | 0 | 36821 | gtex_brain_putamen_basal |
| rs9469889 | 6 | 34763900 | SNRPC | ENSG00000124562.5 | 4.607E-10 | 0 | 38717 | gtex_brain_putamen_basal |
| rs6457792 | 6 | 34764443 | SNRPC | ENSG00000124562.5 | 2.389E-7 | 0 | 39260 | gtex_brain_putamen_basal |
| rs10947531 | 6 | 34765118 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 39935 | gtex_brain_putamen_basal |
| rs998278 | 6 | 34765584 | SNRPC | ENSG00000124562.5 | 1.479E-8 | 0 | 40401 | gtex_brain_putamen_basal |
| rs9469891 | 6 | 34767396 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 42213 | gtex_brain_putamen_basal |
| rs9469892 | 6 | 34769101 | SNRPC | ENSG00000124562.5 | 3.801E-9 | 0 | 43918 | gtex_brain_putamen_basal |
| rs9462023 | 6 | 34769410 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 44227 | gtex_brain_putamen_basal |
| rs9469893 | 6 | 34769580 | SNRPC | ENSG00000124562.5 | 5.835E-10 | 0 | 44397 | gtex_brain_putamen_basal |
| rs7756949 | 6 | 34770181 | SNRPC | ENSG00000124562.5 | 7E-9 | 0 | 44998 | gtex_brain_putamen_basal |
| rs6921363 | 6 | 34770820 | SNRPC | ENSG00000124562.5 | 3.796E-9 | 0 | 45637 | gtex_brain_putamen_basal |
| rs3798348 | 6 | 34771892 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 46709 | gtex_brain_putamen_basal |
| rs3777752 | 6 | 34772212 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 47029 | gtex_brain_putamen_basal |
| rs9462024 | 6 | 34772793 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 47610 | gtex_brain_putamen_basal |
| rs9296129 | 6 | 34774414 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 49231 | gtex_brain_putamen_basal |
| rs9469894 | 6 | 34774725 | SNRPC | ENSG00000124562.5 | 3.128E-7 | 0 | 49542 | gtex_brain_putamen_basal |
| rs9296131 | 6 | 34776361 | SNRPC | ENSG00000124562.5 | 3.707E-9 | 0 | 51178 | gtex_brain_putamen_basal |
| rs6905393 | 6 | 34776626 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 51443 | gtex_brain_putamen_basal |
| rs4601124 | 6 | 34776910 | SNRPC | ENSG00000124562.5 | 4.755E-10 | 0 | 51727 | gtex_brain_putamen_basal |
| rs34141614 | 6 | 34777031 | SNRPC | ENSG00000124562.5 | 1.502E-9 | 0 | 51848 | gtex_brain_putamen_basal |
| rs66506671 | 6 | 34777149 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 51966 | gtex_brain_putamen_basal |
| rs9296132 | 6 | 34777531 | SNRPC | ENSG00000124562.5 | 3.805E-9 | 0 | 52348 | gtex_brain_putamen_basal |
| rs9296133 | 6 | 34777533 | SNRPC | ENSG00000124562.5 | 2.613E-7 | 0 | 52350 | gtex_brain_putamen_basal |
| rs2038839 | 6 | 34777791 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 52608 | gtex_brain_putamen_basal |
| rs2395606 | 6 | 34778486 | SNRPC | ENSG00000124562.5 | 1.372E-9 | 0 | 53303 | gtex_brain_putamen_basal |
| rs7739771 | 6 | 34779801 | SNRPC | ENSG00000124562.5 | 4.775E-10 | 0 | 54618 | gtex_brain_putamen_basal |
| rs10947532 | 6 | 34780315 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 55132 | gtex_brain_putamen_basal |
| rs58338619 | 6 | 34782201 | SNRPC | ENSG00000124562.5 | 2.609E-7 | 0 | 57018 | gtex_brain_putamen_basal |
| rs1543559 | 6 | 34784104 | SNRPC | ENSG00000124562.5 | 4.662E-10 | 0 | 58921 | gtex_brain_putamen_basal |
| rs56924792 | 6 | 34784165 | SNRPC | ENSG00000124562.5 | 1.145E-9 | 0 | 58982 | gtex_brain_putamen_basal |
| rs59111782 | 6 | 34784292 | SNRPC | ENSG00000124562.5 | 5.382E-10 | 0 | 59109 | gtex_brain_putamen_basal |
| rs1543558 | 6 | 34784371 | SNRPC | ENSG00000124562.5 | 3.851E-9 | 0 | 59188 | gtex_brain_putamen_basal |
| rs7776219 | 6 | 34784667 | SNRPC | ENSG00000124562.5 | 4.753E-10 | 0 | 59484 | gtex_brain_putamen_basal |
| rs1125341 | 6 | 34786305 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 61122 | gtex_brain_putamen_basal |
| rs1125340 | 6 | 34786408 | SNRPC | ENSG00000124562.5 | 5.04E-10 | 0 | 61225 | gtex_brain_putamen_basal |
| rs2395604 | 6 | 34787976 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 62793 | gtex_brain_putamen_basal |
| rs1886574 | 6 | 34788612 | SNRPC | ENSG00000124562.5 | 2.941E-10 | 0 | 63429 | gtex_brain_putamen_basal |
| rs7752390 | 6 | 34790624 | SNRPC | ENSG00000124562.5 | 1.013E-7 | 0 | 65441 | gtex_brain_putamen_basal |
| rs7774697 | 6 | 34791027 | SNRPC | ENSG00000124562.5 | 4.752E-10 | 0 | 65844 | gtex_brain_putamen_basal |
| rs112732340 | 6 | 34791333 | SNRPC | ENSG00000124562.5 | 3.562E-9 | 0 | 66150 | gtex_brain_putamen_basal |
| rs6941110 | 6 | 34791334 | SNRPC | ENSG00000124562.5 | 8.328E-7 | 0 | 66151 | gtex_brain_putamen_basal |
| rs12177835 | 6 | 34792262 | SNRPC | ENSG00000124562.5 | 2.596E-8 | 0 | 67079 | gtex_brain_putamen_basal |
| rs9469899 | 6 | 34793124 | SNRPC | ENSG00000124562.5 | 9.132E-8 | 0 | 67941 | gtex_brain_putamen_basal |
| rs9469902 | 6 | 34793768 | SNRPC | ENSG00000124562.5 | 4.749E-10 | 0 | 68585 | gtex_brain_putamen_basal |
| rs144022875 | 6 | 34793804 | SNRPC | ENSG00000124562.5 | 1.886E-8 | 0 | 68621 | gtex_brain_putamen_basal |
| rs7745097 | 6 | 34794434 | SNRPC | ENSG00000124562.5 | 3.796E-9 | 0 | 69251 | gtex_brain_putamen_basal |
| rs11754574 | 6 | 34794961 | SNRPC | ENSG00000124562.5 | 3.68E-9 | 0 | 69778 | gtex_brain_putamen_basal |
| rs7768759 | 6 | 34795685 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 70502 | gtex_brain_putamen_basal |
| rs9469904 | 6 | 34796084 | SNRPC | ENSG00000124562.5 | 2.609E-7 | 0 | 70901 | gtex_brain_putamen_basal |
| rs13219589 | 6 | 34796783 | SNRPC | ENSG00000124562.5 | 1.222E-6 | 0 | 71600 | gtex_brain_putamen_basal |
| rs9462026 | 6 | 34797033 | SNRPC | ENSG00000124562.5 | 4.749E-10 | 0 | 71850 | gtex_brain_putamen_basal |
| rs9462027 | 6 | 34797241 | SNRPC | ENSG00000124562.5 | 2.609E-7 | 0 | 72058 | gtex_brain_putamen_basal |
| rs9469905 | 6 | 34797747 | SNRPC | ENSG00000124562.5 | 6.621E-8 | 0 | 72564 | gtex_brain_putamen_basal |
| rs112283401 | 6 | 34797756 | SNRPC | ENSG00000124562.5 | 1.088E-6 | 0 | 72573 | gtex_brain_putamen_basal |
| rs112327514 | 6 | 34798098 | SNRPC | ENSG00000124562.5 | 4.749E-10 | 0 | 72915 | gtex_brain_putamen_basal |
| rs9462028 | 6 | 34798265 | SNRPC | ENSG00000124562.5 | 1.084E-8 | 0 | 73082 | gtex_brain_putamen_basal |
| rs6937132 | 6 | 34799221 | SNRPC | ENSG00000124562.5 | 4.67E-10 | 0 | 74038 | gtex_brain_putamen_basal |
| rs6937314 | 6 | 34799308 | SNRPC | ENSG00000124562.5 | 4.705E-10 | 0 | 74125 | gtex_brain_putamen_basal |
| rs7739003 | 6 | 34800329 | SNRPC | ENSG00000124562.5 | 7.647E-8 | 0 | 75146 | gtex_brain_putamen_basal |
| rs6925623 | 6 | 34800896 | SNRPC | ENSG00000124562.5 | 4.705E-10 | 0 | 75713 | gtex_brain_putamen_basal |
| rs6906129 | 6 | 34801160 | SNRPC | ENSG00000124562.5 | 3.765E-9 | 0 | 75977 | gtex_brain_putamen_basal |
| rs34657938 | 6 | 34801631 | SNRPC | ENSG00000124562.5 | 1.654E-8 | 0 | 76448 | gtex_brain_putamen_basal |
| rs4624858 | 6 | 34802301 | SNRPC | ENSG00000124562.5 | 4.705E-10 | 0 | 77118 | gtex_brain_putamen_basal |
| rs2296360 | 6 | 34803558 | SNRPC | ENSG00000124562.5 | 4.709E-10 | 0 | 78375 | gtex_brain_putamen_basal |
| rs4259246 | 6 | 34803947 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 78764 | gtex_brain_putamen_basal |
| rs72363955 | 6 | 34807115 | SNRPC | ENSG00000124562.5 | 2.027E-9 | 0 | 81932 | gtex_brain_putamen_basal |
| rs13220394 | 6 | 34810172 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 84989 | gtex_brain_putamen_basal |
| rs6919654 | 6 | 34810739 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 85556 | gtex_brain_putamen_basal |
| rs6924898 | 6 | 34811199 | SNRPC | ENSG00000124562.5 | 4.067E-9 | 0 | 86016 | gtex_brain_putamen_basal |
| rs200628567 | 6 | 34811688 | SNRPC | ENSG00000124562.5 | 3.743E-9 | 0 | 86505 | gtex_brain_putamen_basal |
| rs36111695 | 6 | 34811689 | SNRPC | ENSG00000124562.5 | 3.743E-9 | 0 | 86506 | gtex_brain_putamen_basal |
| rs7748203 | 6 | 34812054 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 86871 | gtex_brain_putamen_basal |
| rs9469909 | 6 | 34813077 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 87894 | gtex_brain_putamen_basal |
| rs6457795 | 6 | 34819366 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 94183 | gtex_brain_putamen_basal |
| rs35964461 | 6 | 34820555 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 95372 | gtex_brain_putamen_basal |
| rs6939600 | 6 | 34822176 | SNRPC | ENSG00000124562.5 | 3.19E-9 | 0 | 96993 | gtex_brain_putamen_basal |
| rs11755393 | 6 | 34824636 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 99453 | gtex_brain_putamen_basal |
| rs9469914 | 6 | 34827693 | SNRPC | ENSG00000124562.5 | 4.646E-10 | 0 | 102510 | gtex_brain_putamen_basal |
| rs6457796 | 6 | 34828553 | SNRPC | ENSG00000124562.5 | 1.328E-6 | 0 | 103370 | gtex_brain_putamen_basal |
| rs4282407 | 6 | 34830162 | SNRPC | ENSG00000124562.5 | 1.402E-8 | 0 | 104979 | gtex_brain_putamen_basal |
| rs9462030 | 6 | 34831280 | SNRPC | ENSG00000124562.5 | 4.75E-10 | 0 | 106097 | gtex_brain_putamen_basal |
| rs9469917 | 6 | 34831369 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 106186 | gtex_brain_putamen_basal |
| rs3734264 | 6 | 34831866 | SNRPC | ENSG00000124562.5 | 3.799E-9 | 0 | 106683 | gtex_brain_putamen_basal |
| rs6925764 | 6 | 34832661 | SNRPC | ENSG00000124562.5 | 5.051E-9 | 0 | 107478 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| PAK2 | 0.96 | 0.97 |
| NEDD4L | 0.96 | 0.96 |
| PBRM1 | 0.95 | 0.97 |
| CNOT6 | 0.95 | 0.97 |
| RBM12 | 0.95 | 0.97 |
| RFX7 | 0.94 | 0.98 |
| ZBTB5 | 0.94 | 0.95 |
| MBTD1 | 0.94 | 0.95 |
| SLC39A6 | 0.94 | 0.96 |
| NUP160 | 0.94 | 0.92 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AIFM3 | -0.70 | -0.78 |
| C5orf53 | -0.70 | -0.76 |
| HLA-F | -0.70 | -0.77 |
| S100B | -0.68 | -0.83 |
| AF347015.31 | -0.68 | -0.88 |
| FXYD1 | -0.68 | -0.89 |
| PTH1R | -0.67 | -0.74 |
| MT-CO2 | -0.67 | -0.90 |
| AF347015.27 | -0.67 | -0.85 |
| ALDOC | -0.67 | -0.69 |
Section III. Gene Ontology annotation
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|---|---|---|---|
| GO:0003676 | nucleic acid binding | IEA | - | |
| GO:0003723 | RNA binding | IEA | - | |
| GO:0008270 | zinc ion binding | IEA | - | |
| GO:0046872 | metal ion binding | IEA | - | |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0008380 | RNA splicing | TAS | 2971157 | |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0005634 | nucleus | IEA | - | |
| GO:0005685 | snRNP U1 | TAS | 2971157 | |
| GO:0030529 | ribonucleoprotein complex | IEA | - |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| KEGG SPLICEOSOME | 128 | 72 | All SZGR 2.0 genes in this pathway |
| SOTIRIOU BREAST CANCER GRADE 1 VS 3 UP | 151 | 84 | All SZGR 2.0 genes in this pathway |
| GARY CD5 TARGETS DN | 431 | 263 | All SZGR 2.0 genes in this pathway |
| PUJANA BRCA1 PCC NETWORK | 1652 | 1023 | All SZGR 2.0 genes in this pathway |
| PUJANA CHEK2 PCC NETWORK | 779 | 480 | All SZGR 2.0 genes in this pathway |
| GARCIA TARGETS OF FLI1 AND DAX1 DN | 176 | 104 | All SZGR 2.0 genes in this pathway |
| STARK PREFRONTAL CORTEX 22Q11 DELETION DN | 517 | 309 | All SZGR 2.0 genes in this pathway |
| MORI MATURE B LYMPHOCYTE DN | 75 | 43 | All SZGR 2.0 genes in this pathway |
| TARTE PLASMA CELL VS PLASMABLAST DN | 309 | 206 | All SZGR 2.0 genes in this pathway |
| PENG RAPAMYCIN RESPONSE DN | 245 | 154 | All SZGR 2.0 genes in this pathway |
| ZHAN MULTIPLE MYELOMA SUBGROUPS | 30 | 20 | All SZGR 2.0 genes in this pathway |
| IVANOVA HEMATOPOIESIS EARLY PROGENITOR | 532 | 309 | All SZGR 2.0 genes in this pathway |
| RAMALHO STEMNESS UP | 206 | 118 | All SZGR 2.0 genes in this pathway |
| ZHANG RESPONSE TO CANTHARIDIN DN | 69 | 46 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER CANCER UP | 973 | 570 | All SZGR 2.0 genes in this pathway |
| ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP | 863 | 514 | All SZGR 2.0 genes in this pathway |
| GRADE COLON CANCER UP | 871 | 505 | All SZGR 2.0 genes in this pathway |
| TAYLOR METHYLATED IN ACUTE LYMPHOBLASTIC LEUKEMIA | 77 | 52 | All SZGR 2.0 genes in this pathway |
| MUELLER PLURINET | 299 | 189 | All SZGR 2.0 genes in this pathway |
| CHANG CORE SERUM RESPONSE UP | 212 | 128 | All SZGR 2.0 genes in this pathway |
| HOFFMANN IMMATURE TO MATURE B LYMPHOCYTE DN | 50 | 36 | All SZGR 2.0 genes in this pathway |
| ZHAN EARLY DIFFERENTIATION GENES DN | 42 | 29 | All SZGR 2.0 genes in this pathway |
| ROME INSULIN TARGETS IN MUSCLE UP | 442 | 263 | All SZGR 2.0 genes in this pathway |
| KIM ALL DISORDERS OLIGODENDROCYTE NUMBER CORR UP | 756 | 494 | All SZGR 2.0 genes in this pathway |
| JOHNSTONE PARVB TARGETS 3 DN | 918 | 550 | All SZGR 2.0 genes in this pathway |
| PEDRIOLI MIR31 TARGETS UP | 221 | 120 | All SZGR 2.0 genes in this pathway |
Section VI. microRNA annotation
| miRNA family | Target position | miRNA ID | miRNA seq | ||
|---|---|---|---|---|---|
| UTR start | UTR end | Match method | |||
| miR-129-5p | 156 | 162 | 1A | hsa-miR-129brain | CUUUUUGCGGUCUGGGCUUGC |
| hsa-miR-129-5p | CUUUUUGCGGUCUGGGCUUGCU | ||||
| miR-23 | 188 | 195 | 1A,m8 | hsa-miR-23abrain | AUCACAUUGCCAGGGAUUUCC |
| hsa-miR-23bbrain | AUCACAUUGCCAGGGAUUACC | ||||
| miR-323 | 188 | 194 | 1A | hsa-miR-323brain | GCACAUUACACGGUCGACCUCU |
- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.