Gene Page: ARMC10
Summary ?
| GeneID | 83787 |
| Symbol | ARMC10 |
| Synonyms | PNAS-112|PNAS112|PSEC0198|SVH |
| Description | armadillo repeat containing 10 |
| Reference | MIM:611864|HGNC:HGNC:21706|Ensembl:ENSG00000170632|HPRD:18133|Vega:OTTHUMG00000157201 |
| Gene type | protein-coding |
| Map location | 7q22.1 |
| Pascal p-value | 0.01 |
| Sherlock p-value | 0.471 |
| eGene | Caudate basal ganglia Cerebellum Cortex Frontal Cortex BA9 Hippocampus Nucleus accumbens basal ganglia Putamen basal ganglia |
| Support | G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs12154379 | 7 | 102636112 | ARMC10 | ENSG00000170632.9 | 1.513E-6 | 0.02 | -79216 | gtex_brain_putamen_basal |
| rs67993916 | 7 | 102637355 | ARMC10 | ENSG00000170632.9 | 1.51E-6 | 0.02 | -77973 | gtex_brain_putamen_basal |
| rs7799057 | 7 | 102656072 | ARMC10 | ENSG00000170632.9 | 2.092E-6 | 0.02 | -59256 | gtex_brain_putamen_basal |
| rs4609128 | 7 | 102662540 | ARMC10 | ENSG00000170632.9 | 8.952E-7 | 0.02 | -52788 | gtex_brain_putamen_basal |
| rs952879 | 7 | 102666696 | ARMC10 | ENSG00000170632.9 | 1.954E-6 | 0.02 | -48632 | gtex_brain_putamen_basal |
| rs7785272 | 7 | 102671023 | ARMC10 | ENSG00000170632.9 | 2.625E-6 | 0.02 | -44305 | gtex_brain_putamen_basal |
| rs10808120 | 7 | 102672234 | ARMC10 | ENSG00000170632.9 | 2.672E-6 | 0.02 | -43094 | gtex_brain_putamen_basal |
| rs55817310 | 7 | 102672831 | ARMC10 | ENSG00000170632.9 | 1.511E-6 | 0.02 | -42497 | gtex_brain_putamen_basal |
| rs7806025 | 7 | 102675208 | ARMC10 | ENSG00000170632.9 | 2.121E-6 | 0.02 | -40120 | gtex_brain_putamen_basal |
| rs12113318 | 7 | 102684427 | ARMC10 | ENSG00000170632.9 | 1.51E-6 | 0.02 | -30901 | gtex_brain_putamen_basal |
| rs6465889 | 7 | 102684865 | ARMC10 | ENSG00000170632.9 | 1.51E-6 | 0.02 | -30463 | gtex_brain_putamen_basal |
| rs56165482 | 7 | 102690188 | ARMC10 | ENSG00000170632.9 | 2.142E-6 | 0.02 | -25140 | gtex_brain_putamen_basal |
| rs7806616 | 7 | 102692329 | ARMC10 | ENSG00000170632.9 | 2.142E-6 | 0.02 | -22999 | gtex_brain_putamen_basal |
| rs73410128 | 7 | 102693694 | ARMC10 | ENSG00000170632.9 | 1.51E-6 | 0.02 | -21634 | gtex_brain_putamen_basal |
| rs6958836 | 7 | 102717384 | ARMC10 | ENSG00000170632.9 | 2.121E-6 | 0.02 | 2056 | gtex_brain_putamen_basal |
| rs74366364 | 7 | 102735730 | ARMC10 | ENSG00000170632.9 | 2.103E-6 | 0.02 | 20402 | gtex_brain_putamen_basal |
| rs1061844 | 7 | 102739188 | ARMC10 | ENSG00000170632.9 | 2.006E-6 | 0.02 | 23860 | gtex_brain_putamen_basal |
| rs73175808 | 7 | 102772511 | ARMC10 | ENSG00000170632.9 | 2.142E-6 | 0.02 | 57183 | gtex_brain_putamen_basal |
| rs6465903 | 7 | 102775258 | ARMC10 | ENSG00000170632.9 | 2.143E-6 | 0.02 | 59930 | gtex_brain_putamen_basal |
| rs7796971 | 7 | 102776724 | ARMC10 | ENSG00000170632.9 | 2.141E-6 | 0.02 | 61396 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| IVANOVA HEMATOPOIESIS STEM CELL AND PROGENITOR | 681 | 420 | All SZGR 2.0 genes in this pathway |
| KRIGE RESPONSE TO TOSEDOSTAT 6HR DN | 911 | 527 | All SZGR 2.0 genes in this pathway |
| KRIGE RESPONSE TO TOSEDOSTAT 24HR DN | 1011 | 592 | All SZGR 2.0 genes in this pathway |
| CREIGHTON ENDOCRINE THERAPY RESISTANCE 1 | 528 | 324 | All SZGR 2.0 genes in this pathway |
| ZHANG BREAST CANCER PROGENITORS UP | 425 | 253 | All SZGR 2.0 genes in this pathway |
| PILON KLF1 TARGETS DN | 1972 | 1213 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE MIDDLE | 98 | 56 | All SZGR 2.0 genes in this pathway |
| LEE BMP2 TARGETS UP | 745 | 475 | All SZGR 2.0 genes in this pathway |