Summary ?
GeneID85379
SymbolKIAA1671
Synonyms-
DescriptionKIAA1671
ReferenceHGNC:HGNC:29345|Ensembl:ENSG00000197077|
Gene typeprotein-coding
Map location22q11.23
Pascal p-value0.005
Fetal beta-2.272
DMG1 (# studies)
eGeneAnterior cingulate cortex BA24
Meta
SupportAscano FMRP targets

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:GWASdbGenome-wide Association StudiesGWASdb records for schizophrenia
CV:PGCnpGenome-wide Association StudyGWAS
DMG:Wockner_2014Genome-wide DNA methylation analysisThis dataset includes 4641 differentially methylated probes corresponding to 2929 unique genes between schizophrenia patients (n=24) and controls (n=24). 1

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

ProbeChromosomePositionNearest geneP (dis)Beta (dis)FDR (dis)Study
cg088205682225423974KIAA16712.451E-40.4470.037DMG:Wockner_2014

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs96247172225467431KIAA1671ENSG00000197077.87.48379E-70.02118734gtex_brain_ba24
rs7383242225468432KIAA1671ENSG00000197077.87.57315E-70.02119735gtex_brain_ba24
rs7139612225468709KIAA1671ENSG00000197077.87.59041E-70.02120012gtex_brain_ba24
rs59968312225469310KIAA1671ENSG00000197077.87.66206E-70.02120613gtex_brain_ba24
rs60044252225469846KIAA1671ENSG00000197077.87.75057E-70.02121149gtex_brain_ba24
rs93064092225470546KIAA1671ENSG00000197077.84.32499E-70.02121849gtex_brain_ba24
rs2015871192225470555KIAA1671ENSG00000197077.86.99815E-70.02121858gtex_brain_ba24
rs93064102225470557KIAA1671ENSG00000197077.85.26342E-70.02121860gtex_brain_ba24

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
FULCHER INFLAMMATORY RESPONSE LECTIN VS LPS UP 579346All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN 805505All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA ANAPLASTIC DN 537339All SZGR 2.0 genes in this pathway
PEREZ TP53 TARGETS 1174695All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 3 720440All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 5 482296All SZGR 2.0 genes in this pathway
KRIEG HYPOXIA NOT VIA KDM3A 770480All SZGR 2.0 genes in this pathway