Gene Page: RCCD1
Summary ?
| GeneID | 91433 |
| Symbol | RCCD1 |
| Synonyms | - |
| Description | RCC1 domain containing 1 |
| Reference | HGNC:HGNC:30457|Ensembl:ENSG00000166965|HPRD:18706|Vega:OTTHUMG00000171684 |
| Gene type | protein-coding |
| Map location | 15q26.1 |
| Pascal p-value | 0.006 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Nucleus accumbens basal ganglia Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs1105291 | 15 | 91502383 | RCCD1 | ENSG00000166965.8 | 2.145E-7 | 0 | 4283 | gtex_brain_ba24 |
| rs8038661 | 15 | 91502849 | RCCD1 | ENSG00000166965.8 | 2.009E-7 | 0 | 4749 | gtex_brain_ba24 |
| rs79548680 | 15 | 91505779 | RCCD1 | ENSG00000166965.8 | 4.774E-8 | 0 | 7679 | gtex_brain_ba24 |
| rs8028409 | 15 | 91506422 | RCCD1 | ENSG00000166965.8 | 3.768E-9 | 0 | 8322 | gtex_brain_ba24 |
| rs8037137 | 15 | 91506637 | RCCD1 | ENSG00000166965.8 | 2.363E-8 | 0 | 8537 | gtex_brain_ba24 |
| rs112770790 | 15 | 91507495 | RCCD1 | ENSG00000166965.8 | 1.19E-8 | 0 | 9395 | gtex_brain_ba24 |
| rs77554484 | 15 | 91509215 | RCCD1 | ENSG00000166965.8 | 1.128E-8 | 0 | 11115 | gtex_brain_ba24 |
| rs2290203 | 15 | 91512067 | RCCD1 | ENSG00000166965.8 | 1.946E-7 | 0 | 13967 | gtex_brain_ba24 |
| rs2290202 | 15 | 91512267 | RCCD1 | ENSG00000166965.8 | 3.961E-9 | 0 | 14167 | gtex_brain_ba24 |
| rs2890156 | 15 | 91513157 | RCCD1 | ENSG00000166965.8 | 2.822E-9 | 0 | 15057 | gtex_brain_ba24 |
| rs12595025 | 15 | 91520131 | RCCD1 | ENSG00000166965.8 | 3.961E-9 | 0 | 22031 | gtex_brain_ba24 |
| rs12594925 | 15 | 91520287 | RCCD1 | ENSG00000166965.8 | 3.961E-9 | 0 | 22187 | gtex_brain_ba24 |
| rs113343095 | 15 | 91522092 | RCCD1 | ENSG00000166965.8 | 1.583E-8 | 0 | 23992 | gtex_brain_ba24 |
| rs8026714 | 15 | 91522253 | RCCD1 | ENSG00000166965.8 | 3.961E-9 | 0 | 24153 | gtex_brain_ba24 |
| rs2301826 | 15 | 91525197 | RCCD1 | ENSG00000166965.8 | 4.31E-7 | 0 | 27097 | gtex_brain_ba24 |
| rs2301825 | 15 | 91528070 | RCCD1 | ENSG00000166965.8 | 3.94E-9 | 0 | 29970 | gtex_brain_ba24 |
| rs150333865 | 15 | 91528875 | RCCD1 | ENSG00000166965.8 | 3.909E-9 | 0 | 30775 | gtex_brain_ba24 |
| rs60290423 | 15 | 91529452 | RCCD1 | ENSG00000166965.8 | 3.886E-9 | 0 | 31352 | gtex_brain_ba24 |
| rs12594752 | 15 | 91531995 | RCCD1 | ENSG00000166965.8 | 4.592E-9 | 0 | 33895 | gtex_brain_ba24 |
| rs76119208 | 15 | 91535329 | RCCD1 | ENSG00000166965.8 | 4.335E-9 | 0 | 37229 | gtex_brain_ba24 |
| rs78029804 | 15 | 91538920 | RCCD1 | ENSG00000166965.8 | 4.231E-9 | 0 | 40820 | gtex_brain_ba24 |
| rs3826033 | 15 | 91548601 | RCCD1 | ENSG00000166965.8 | 1.215E-8 | 0 | 50501 | gtex_brain_ba24 |
| rs79253100 | 15 | 91551876 | RCCD1 | ENSG00000166965.8 | 3.88E-9 | 0 | 53776 | gtex_brain_ba24 |
| rs7183740 | 15 | 91558457 | RCCD1 | ENSG00000166965.8 | 4.712E-9 | 0 | 60357 | gtex_brain_ba24 |
| rs3743445 | 15 | 91561182 | RCCD1 | ENSG00000166965.8 | 4.502E-9 | 0 | 63082 | gtex_brain_ba24 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| DODD NASOPHARYNGEAL CARCINOMA DN | 1375 | 806 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY SERUM DEPRIVATION UP | 552 | 347 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN RESPONSE TO MC AND DOXORUBICIN DN | 770 | 415 | All SZGR 2.0 genes in this pathway |
| NUYTTEN NIPP1 TARGETS UP | 769 | 437 | All SZGR 2.0 genes in this pathway |
| BENPORATH CYCLING GENES | 648 | 385 | All SZGR 2.0 genes in this pathway |
| CADWELL ATG16L1 TARGETS DN | 70 | 43 | All SZGR 2.0 genes in this pathway |
| WHITFIELD CELL CYCLE G2 | 182 | 102 | All SZGR 2.0 genes in this pathway |
| FOSTER KDM1A TARGETS DN | 211 | 119 | All SZGR 2.0 genes in this pathway |