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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CHST10

Summary

GeneID

9486

Symbol

CHST10

Synonyms

HNK-1ST|HNK1ST|MGC17148

Description

carbohydrate sulfotransferase 10

Locus tag

Gene type

protein-coding

Map location

2q11.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.0004

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

GRAMD3

0.81

0.82

ALDH6A1

0.78

0.75

TPP1

0.77

0.76

TMBIM1

0.76

0.78

DTNA

0.76

SPARCL1

0.75

0.78

MRO

0.74

0.75

ANXA4

0.74

0.76

GALNTL2

0.74

0.78

KCNJ10

0.73

0.78

Top 10 negatively co-expressed genes

NKIRAS2

-0.55

-0.54

HN1

-0.53

-0.57

KIAA1949

-0.52

-0.51

TUBB

-0.52

-0.54

NR2C2AP

-0.52

-0.60

ZNF821

-0.52

-0.53

MED19

-0.52

-0.61

PAFAH1B3

-0.52

-0.62

TUBB2B

-0.52

-0.51

MPP3

-0.52

-0.51

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016740

transferase activity

IEA

GO:0008146

sulfotransferase activity

TAS

9478973

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007155

cell adhesion

TAS

9478973

GO:0005975

carbohydrate metabolic process

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000139

Golgi membrane

IEA

GO:0005794

Golgi apparatus

TAS

9478973

GO:0005624

membrane fraction

TAS

9478973

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-137	1092	1098	1A	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-182	1374	1380	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-23	1348	1355	1A,m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
miR-23	1348	1355	1A,m8	hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-323	1348	1354	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-96	1373	1380	1A,m8	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.