Gene Page: SMAD5-AS1

Summary ?
GeneID9597
SymbolSMAD5-AS1
SynonymsDAMS|SMAD5AS|SMAD5OS
DescriptionSMAD5 antisense RNA 1
ReferenceHGNC:HGNC:30586|Ensembl:ENSG00000164621|HPRD:09904|
Gene typencRNA
Map location5q31.1
Pascal p-value0.477
Fetal beta0.093

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:GWASdbGenome-wide Association StudiesGWASdb records for schizophrenia
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
GenePearson's Correlation Spearman's Correlation
TMCO10.800.74
TRAM10.770.68
TMBIM60.740.67
OSTC0.740.64
CNN30.730.66
ADH50.730.74
PTTG1IP0.730.68
CLNS1A0.730.66
PRTFDC10.730.68
TSPAN60.730.64
Top 10 negatively co-expressed genes
GenePearson's Correlation Spearman's Correlation
AC098691.2-0.44-0.55
ZFP57-0.41-0.50
USHBP1-0.40-0.48
AL132868.3-0.39-0.45
AC018755.7-0.38-0.41
APOL1-0.38-0.45
ZBTB47-0.38-0.39
CATSPER2-0.38-0.46
SLC9A3R2-0.38-0.40
MT-CO2-0.37-0.44

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
PEREZ TP53 TARGETS 1174695All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS DN 357212All SZGR 2.0 genes in this pathway