DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
APVIV
Uniprot ID:
Q13002
Source protein:
Glutamate receptor ionotropic, kainate 2
Source gene:
GRIK2
Class:
DEG_Kelch_actinfilin_1
Location:
881:885
E3 ligase:
CUL3,KLHL17
DEGRON score:
0.9182
ASA_SCORE:
95.58
COIL:
0.9282
CONS_SCORE:
0.2706
DSS_SCORE:
0.3868
HELIX:
0.0306
FCONS_SCORE:
0.9591
RIG_SCORE:
0.7704
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P879Q
TCGA-43-2581
LUSC
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.2778
p.Q880H
TCGA-66-2773
LUSC
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.3056
p.Q880H
DO26536
LUSC
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.3056
p.R873C
TCGA-AA-A02R
COAD
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.1111
p.R873C
TCGA-OE-A75W
PAAD
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.1111
p.R873C
DO230342
COCA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1111
p.R873C
DO50265
PAAD
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1111
p.R874Q
TCGA-AB-2919
LAML
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.1389
p.N892S
TCGA-AJ-A3EL
UCEC
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.1389
p.N892S
DO41542
UCEC
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1389
p.E889K
TCGA-DD-A11D
LIHC
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.2222
p.E889K
DO23010
LIHC
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2222
p.P882T
TCGA-EE-A2A6
SKCM
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.7031
p.P882T
DO37591
SKCM
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.7031
p.V885L
TCGA-EI-6881
READ
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.6765
p.V885L
DO37098
READ
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.6765
p.R874P
TCGA-L9-A444
LUAD
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.1389
p.P879S
TCGA-RB-AA9M
PAAD
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.2778
p.P879S
DO51718
PAAD
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2778
p.E889V
DO234278
ESAD
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2222
p.S889P
DO223124
ESCA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2222
p.S874F
DO49666
LIAD
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1389
p.C871F
DO228952
LICA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.0556
p.E871D
DO45167
LIRI
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.0556
p.P883L
DO230530
LUSC
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.7582
p.L875V
DO52686
MALY
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.E888K
DO222837
MELA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.25
p.E871Q
DO36888
READ
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.0556
p.S889L
DO229462
SKCA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2222
p.L875F
SIDM00845
Burkitt's Lymphoma
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.L875F
SIDM00946
T-Lymphoblastic Leukemia
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.L875F
ACH-000786
Lymphoma
CCLE
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.L875F
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.S886L
SIDM01060
Melanoma
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.3056
p.M893I
SIDM00780
Colorectal Carcinoma
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.1111
p.M893I
ACH-000967
Colon/Colorectal Cancer
CCLE
APVIV
DEG_Kelch_actinfilin_1
0.1111
Drug responses associated with GRIK2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of APVIV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13002
Glutamate receptor ionotropic, kainate 2
DEG_Kelch_actinfilin_1
881:885
APVIV
CUL3,KLHL17
0.9182
More...
Q6P158
Putative ATP-dependent RNA helicase DHX57
DEG_Kelch_actinfilin_1
487:491
APVIV
CUL3,KLHL17
0.9985
More...
Q9Y618
Nuclear receptor corepressor 2
DEG_Kelch_actinfilin_1
1526:1530
APVIV
CUL3,KLHL17
0.9854
More...
Q9UKY7
Protein CDV3 homolog
DEG_Kelch_actinfilin_1
152:156
APVIV
CUL3,KLHL17
0.9813
More...