DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
APVIV
Uniprot ID:
Q6P158
Source protein:
Putative ATP-dependent RNA helicase DHX57
Source gene:
DHX57
Class:
DEG_Kelch_actinfilin_1
Location:
487:491
E3 ligase:
CUL3,KLHL17
DEGRON score:
0.9985
ASA_SCORE:
74.86
COIL:
0.8648
CONS_SCORE:
0.2395
DSS_SCORE:
0.577
HELIX:
0.0562
FCONS_SCORE:
0.9075
RIG_SCORE:
0.7549
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G485C
TCGA-69-7763
LUAD
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.2778
p.G485C
DO24616
LUAD
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.2778
p.P488L
TCGA-EE-A2MR
SKCM
TCGA
APVIV
DEG_Kelch_actinfilin_1
0.7582
p.P488L
DO37819
SKCM
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.7582
p.V497M
DO50883
LICA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.1667
p.P486L
DO222363
MELA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.3056
p.S477F
DO229465
SKCA
ICGC
APVIV
DEG_Kelch_actinfilin_1
0.5
p.E482D
SIDM00131
Glioma
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.1944
p.E482D
ACH-000329
Brain Cancer
CCLE
APVIV
DEG_Kelch_actinfilin_1
0.1944
p.E482D
CCF-STTG1
central_nervous_system
COSMIC
APVIV
DEG_Kelch_actinfilin_1
0.1944
p.K500R
SIDM01739
Small Cell Lung Carcinoma
GDSC
APVIV
DEG_Kelch_actinfilin_1
0.1944
p.K500R
ACH-000297
Lung Cancer
CCLE
APVIV
DEG_Kelch_actinfilin_1
0.1944
Drug responses associated with DHX57 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of APVIV
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13002
Glutamate receptor ionotropic, kainate 2
DEG_Kelch_actinfilin_1
881:885
APVIV
CUL3,KLHL17
0.9182
More...
Q6P158
Putative ATP-dependent RNA helicase DHX57
DEG_Kelch_actinfilin_1
487:491
APVIV
CUL3,KLHL17
0.9985
More...
Q9Y618
Nuclear receptor corepressor 2
DEG_Kelch_actinfilin_1
1526:1530
APVIV
CUL3,KLHL17
0.9854
More...
Q9UKY7
Protein CDV3 homolog
DEG_Kelch_actinfilin_1
152:156
APVIV
CUL3,KLHL17
0.9813
More...