DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DKENL
Uniprot ID:
Q9BZI7
Source protein:
Regulator of nonsense transcripts 3B
Source gene:
UPF3B
Class:
DEG_APCC_KENBOX_2
Location:
305:309
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9885
ASA_SCORE:
113.4
COIL:
0.4358
CONS_SCORE:
0.4528
DSS_SCORE:
0.6242
HELIX:
0.5646
FCONS_SCORE:
1.2426
RIG_SCORE:
0.6799
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E299D
TCGA-97-7938
LUAD
TCGA
DKENL
DEG_APCC_KENBOX_2
0.1667
p.K302N
TCGA-A5-A0G1
UCEC
TCGA
DKENL
DEG_APCC_KENBOX_2
0.3611
p.R298K
TCGA-AG-A00Y
READ
TCGA
DKENL
DEG_APCC_KENBOX_2
0.1389
p.K297Q
TCGA-B5-A11G
UCEC
TCGA
DKENL
DEG_APCC_KENBOX_2
0.2222
p.K303E
TCGA-BR-4361
STAD
TCGA
DKENL
DEG_APCC_KENBOX_2
0.2778
p.L309F
TCGA-CV-A465
HNSC
TCGA
DKENL
DEG_APCC_KENBOX_2
0.587
p.E319K
DO2401
BRCA
ICGC
DKENL
DEG_APCC_KENBOX_2
0.0556
p.L296F
DO52069
HNSC
ICGC
DKENL
DEG_APCC_KENBOX_2
0.0833
p.S314N
DO23184
LINC
ICGC
DKENL
DEG_APCC_KENBOX_2
0.1944
p.K310E
DO42673
UCEC
ICGC
DKENL
DEG_APCC_KENBOX_2
0.75
p.A301T
SIDM01175
Other Sarcomas
GDSC
DKENL
DEG_APCC_KENBOX_2
0.2222
p.A301T
SW684
soft_tissue
COSMIC
DKENL
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with UPF3B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DKENL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P17022
Zinc finger protein 18
DEG_APCC_KENBOX_2
294:298
DKENL
APC,CDC20,FZR1
0.9976
More...
Q5MIZ7
Serine/threonine-protein phosphatase 4 regulatory subunit 3B
DEG_APCC_KENBOX_2
759:763
DKENL
APC,CDC20,FZR1
0.996
More...
Q9BZI7
Regulator of nonsense transcripts 3B
DEG_APCC_KENBOX_2
305:309
DKENL
APC,CDC20,FZR1
0.9885
More...
Q96JM4
Leucine-rich repeat and IQ domain-containing protein 1
DEG_APCC_KENBOX_2
1499:1503
DKENL
APC,CDC20,FZR1
0.9715
More...