DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GKENP
Uniprot ID:
Q5K651
Source protein:
Sterile alpha motif domain-containing protein 9
Source gene:
SAMD9
Class:
DEG_APCC_KENBOX_2
Location:
116:120
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7712
ASA_SCORE:
94.7
COIL:
0.866
CONS_SCORE:
0.3662
DSS_SCORE:
0.8345
HELIX:
0.0936
FCONS_SCORE:
1.1365
RIG_SCORE:
0.5762
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Q114P
TCGA-D1-A1NY
UCEC
TCGA
GKENP
DEG_APCC_KENBOX_2
0.2778
p.Q114P
DO42512
UCEC
ICGC
GKENP
DEG_APCC_KENBOX_2
0.2778
p.Q112R
TCGA-EE-A2MI
SKCM
TCGA
GKENP
DEG_APCC_KENBOX_2
0.2222
p.Q112R
DO37531
SKCM
ICGC
GKENP
DEG_APCC_KENBOX_2
0.2222
p.R106H
DO222769
COCA
ICGC
GKENP
DEG_APCC_KENBOX_2
0.0556
p.Q114K
DO228948
LICA
ICGC
GKENP
DEG_APCC_KENBOX_2
0.2778
p.K115R
SIDM01612
Endometrial Carcinoma
GDSC
GKENP
DEG_APCC_KENBOX_2
0.3056
p.K115R
ACH-000946
Endometrial/Uterine Cancer
CCLE
GKENP
DEG_APCC_KENBOX_2
0.3056
p.R106C
SIDM00016
Neuroblastoma
GDSC
GKENP
DEG_APCC_KENBOX_2
0.0556
p.P125S
ACH-002396
Bone Cancer
CCLE
GKENP
DEG_APCC_KENBOX_2
0.1944
p.P125S
Sarc9371
bone
COSMIC
GKENP
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with SAMD9 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENP
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P28039
Acyloxyacyl hydrolase
DEG_APCC_KENBOX_2
556:560
GKENP
APC,CDC20,FZR1
0.6187
More...
Q5K651
Sterile alpha motif domain-containing protein 9
DEG_APCC_KENBOX_2
116:120
GKENP
APC,CDC20,FZR1
0.7712
More...
Q5VTB9
E3 ubiquitin-protein ligase RNF220
DEG_APCC_KENBOX_2
384:388
GKENP
APC,CDC20,FZR1
0.7646
More...
Q6Q759
Sperm-associated antigen 17
DEG_APCC_KENBOX_2
2195:2199
GKENP
APC,CDC20,FZR1
0.7302
More...