DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPGCT
Uniprot ID:
Q01538
Source protein:
Myelin transcription factor 1
Source gene:
MYT1
Class:
DEG_SCF_FBW7_1
Location:
31:36
E3 ligase:
FBXW7
DEGRON score:
0.9935
ASA_SCORE:
63.95
COIL:
0.8893
CONS_SCORE:
0.4401
DSS_SCORE:
0.4311
HELIX:
0.0305
FCONS_SCORE:
1.1931
RIG_SCORE:
0.6179
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V41I
TCGA-32-2616
GBM
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.V41I
TCGA-HU-A4H0
STAD
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.V41I
DO13462
GBM
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.V41I
DO47785
STAD
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.T36I
TCGA-A5-A1OF
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.8189
p.T36I
DO42568
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.8189
p.E22D
TCGA-BR-8680
STAD
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.E22D
TCGA-DF-A2KV
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.E22D
DO47769
STAD
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.E22D
DO219771
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.C30Y
TCGA-D1-A2G0
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.3056
p.C30Y
DO43049
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.3056
p.P21Q
TCGA-D3-A8GL
SKCM
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.0556
p.P21Q
DO50287
SKCM
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0556
p.G39W
TCGA-EO-A22X
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.25
p.G39W
DO43907
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.25
p.G34A
DO1075
BRCA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.6429
p.T23N
DO231985
LICA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1111
p.G37C
DO42673
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.3056
p.S38A
SIDM01078
Small Cell Lung Carcinoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.7222
p.S38A
ACH-000790
Lung Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.7222
p.S38A
SHP-77
lung
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.7222
p.L28I
SIDM00941
Kidney Carcinoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.25
p.L28I
CAKI-1
kidney
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.25
p.R42W
SIDM00292
Small Cell Lung Carcinoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.R42W
ACH-002077
Lung Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.R42W
LU-165
lung
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.1667
Drug responses associated with MYT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPGCT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60284
Suppression of tumorigenicity 18 protein
DEG_SCF_FBW7_1
413:418
PTPGCT
FBXW7
0.9794
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
31:36
PTPGCT
FBXW7
0.9935
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
487:492
PTPGCT
FBXW7
0.9011
More...
Q9UL68
Myelin transcription factor 1-like protein
DEG_SCF_FBW7_1
551:556
PTPGCT
FBXW7
0.9351
More...