DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPGCT
Uniprot ID:
Q01538
Source protein:
Myelin transcription factor 1
Source gene:
MYT1
Class:
DEG_SCF_FBW7_1
Location:
487:492
E3 ligase:
FBXW7
DEGRON score:
0.9011
ASA_SCORE:
62
COIL:
0.8795
CONS_SCORE:
0.772
DSS_SCORE:
0.3397
HELIX:
0.0237
FCONS_SCORE:
1.2269
RIG_SCORE:
0.6681
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R501H
TCGA-19-1787
GBM
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.R501H
DO13522
GBM
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.G490D
TCGA-2Z-A9JS
KIRP
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.6087
p.A478V
TCGA-AP-A051
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.A478V
DO42673
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.N498H
TCGA-AP-A0LM
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.N498H
DO43306
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.E481K
TCGA-EE-A29E
SKCM
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.E481K
DO37831
SKCM
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.G495S
TCGA-SX-A7SL
KIRP
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.25
p.N498K
SIDM00545
Melanoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.N498K
ACH-000987
Skin Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.N498K
Mewo
skin
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.1667
p.V483A
SIDM01878
Non-Cancerous
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.2222
p.V483A
SIDM00053
Pancreatic Carcinoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.2222
p.V483A
ACH-002360
Non-Cancerous
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.2222
p.C491R
SIDM00429
B-Lymphoblastic Leukemia
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.719
p.C491R
NALM-6
haematopoietic_and_lymphoid_tissue
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.719
p.T501I
HT-115
large_intestine
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.0833
Drug responses associated with MYT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPGCT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60284
Suppression of tumorigenicity 18 protein
DEG_SCF_FBW7_1
413:418
PTPGCT
FBXW7
0.9794
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
31:36
PTPGCT
FBXW7
0.9935
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
487:492
PTPGCT
FBXW7
0.9011
More...
Q9UL68
Myelin transcription factor 1-like protein
DEG_SCF_FBW7_1
551:556
PTPGCT
FBXW7
0.9351
More...