DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PTPGCT
Uniprot ID:
Q9UL68
Source protein:
Myelin transcription factor 1-like protein
Source gene:
MYT1L
Class:
DEG_SCF_FBW7_1
Location:
551:556
E3 ligase:
FBXW7
DEGRON score:
0.9351
ASA_SCORE:
61.35
COIL:
0.8665
CONS_SCORE:
0.7149
DSS_SCORE:
0.3499
HELIX:
0.0265
FCONS_SCORE:
1.262
RIG_SCORE:
0.6631
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G552C
TCGA-37-4141
LUSC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.76
p.G552C
DO26862
LUSC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.76
p.R556S
TCGA-77-8133
LUSC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.7427
p.R556S
DO27039
LUSC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7427
p.T554M
TCGA-AA-3864
COAD
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.T554M
TCGA-XF-A9SG
BLCA
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.T554M
DO51912
BLCA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.T554M
DO8490
COAD
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.T554M
DO222285
GACA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.T554M
DO233843
GACA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7423
p.P551L
TCGA-AJ-A3BH
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.6471
p.P551L
DO225337
BRCA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.6471
p.P551L
DO41638
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.6471
p.P551L
ACH-000941
Endometrial/Uterine Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.6471
p.P551L
ACH-000954
Endometrial/Uterine Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.6471
p.R556C
TCGA-AP-A051
UCEC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.8301
p.R556C
DO42673
UCEC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.8301
p.R556C
ACH-001610
Brain Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.8301
p.R556H
TCGA-DX-A6YS
SARC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.R556H
TCGA-EK-A2H0
CESC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.R556H
TCGA-MK-A4N7
THCA
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.R556H
DO49020
CESC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.R556H
DO220005
SARC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.R556H
DO39404
THCA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.8244
p.T554K
TCGA-L9-A7SV
LUAD
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.7306
p.T554K
DO229025
LICA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7306
p.T554K
DO49875
LUAD
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.7306
p.L546F
TCGA-NK-A5CR
LUSC
TCGA
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.L546F
DO219207
LUSC
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.1944
p.H566Q
DO228974
LICA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.0556
p.N560K
DO229035
LICA
ICGC
PTPGCT
DEG_SCF_FBW7_1
0.2222
p.C550F
SIDM00427
Ewing's Sarcoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.3056
p.C550F
RH-1
soft_tissue
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.3056
p.A542V
SIDM00534
Colorectal Carcinoma
GDSC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.A542V
HT-115
large_intestine
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.0833
p.P551T
ACH-001416
Bladder Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.7031
p.C548F
ACH-002194
Bone Cancer
CCLE
PTPGCT
DEG_SCF_FBW7_1
0.25
p.C548F
RH-1
soft_tissue
COSMIC
PTPGCT
DEG_SCF_FBW7_1
0.25
Drug responses associated with MYT1L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPGCT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60284
Suppression of tumorigenicity 18 protein
DEG_SCF_FBW7_1
413:418
PTPGCT
FBXW7
0.9794
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
31:36
PTPGCT
FBXW7
0.9935
More...
Q01538
Myelin transcription factor 1
DEG_SCF_FBW7_1
487:492
PTPGCT
FBXW7
0.9011
More...
Q9UL68
Myelin transcription factor 1-like protein
DEG_SCF_FBW7_1
551:556
PTPGCT
FBXW7
0.9351
More...