DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTVTPVPS
Uniprot ID:
P08519
Source protein:
Apolipoprotein
Source gene:
LPA
Class:
DEG_SCF_FBW7_1
Location:
344:351
E3 ligase:
FBXW7
DEGRON score:
0.9853
ASA_SCORE:
73.6375
COIL:
0.8288
CONS_SCORE:
0.6536
DSS_SCORE:
0.6327
HELIX:
0.0208
FCONS_SCORE:
1.0142
RIG_SCORE:
0.6993
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P360L
TCGA-06-0152
GBM
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.0833
p.P360L
DO11238
GBM
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.0833
p.P344L
TCGA-14-0740
GBM
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.6471
p.P344L
DO12058
GBM
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.6471
p.A342T
TCGA-AN-A0AK
BRCA
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.A342T
TCGA-SJ-A6ZI
UCEC
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.A342T
DO1608
BRCA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.A342T
DO219784
UCEC
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.E357K
TCGA-OD-A75X
SKCM
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.1667
p.E357K
DO48601
SKCM
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.1667
p.E337K
TCGA-XF-A9SY
BLCA
TCGA
PTVTPVPS
DEG_SCF_FBW7_1
0.1389
p.E337K
DO51918
BLCA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.1389
p.P344S
DO220875
MELA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.6752
p.L352I
DO220903
MELA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.3056
p.V346A
DO220906
MELA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.5825
p.V341I
DO38671
STAD
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.25
p.V341I
EW-16
bone
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.25
p.A340V
DO229542
UTCA
ICGC
PTVTPVPS
DEG_SCF_FBW7_1
0.2222
p.A340V
NCI-SNU-1
stomach
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2222
p.P350S
IGR-1
skin
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.5641
p.P355L
Mewo
skin
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2222
p.P355L
IMR-5
autonomic_ganglia
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2222
p.E353K
IPC-298
skin
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.A354T
C-33-A
cervix
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.25
p.A342V
NCI-H747
large_intestine
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2778
p.P355S
Mewo
skin
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.2222
p.A343V
SNU-175
large_intestine
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.3056
p.S356F
GCT
soft_tissue
COSMIC
PTVTPVPS
DEG_SCF_FBW7_1
0.1944
Drug responses associated with LPA mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTVTPVPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P08519
Apolipoprotein
DEG_SCF_FBW7_1
116:123
PTVTPVPS
FBXW7
0.9872
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
230:237
PTVTPVPS
FBXW7
0.9919
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
344:351
PTVTPVPS
FBXW7
0.9853
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
458:465
PTVTPVPS
FBXW7
0.9769
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
572:579
PTVTPVPS
FBXW7
0.9871
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
686:693
PTVTPVPS
FBXW7
0.9901
More...
P08519
Apolipoprotein
DEG_SCF_FBW7_1
800:807
PTVTPVPS
FBXW7
0.9923
More...