DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RVGIFLD
Uniprot ID:
O75677
Source protein:
Ret finger protein-like 1
Source gene:
RFPL1
Class:
LIG_APCC_ABBAyCdc20_2
Location:
244:250
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5402
ASA_SCORE:
18.8571
COIL:
0.0264
CONS_SCORE:
0.9161
DSS_SCORE:
0.0338
HELIX:
0.0021
FCONS_SCORE:
1.4762
RIG_SCORE:
0.9295
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R244Q
SIDM00656
Burkitt's Lymphoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01112
Osteosarcoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00879
Breast Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00849
Kidney Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01124
Non-Small Cell Lung Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00641
Burkitt's Lymphoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01686
Chronic Myelogenous Leukemia
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01409
Bladder Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.D250N
TCGA-W3-AA1Q
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6932
p.D250N
DO219487
SKCM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6932
p.G246E
ACH-001982
Metastasis
CCLE
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6087
p.I247L
SIDM01335
Kidney Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6063
p.L249V
DO224876
BRCA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.5654
p.M251T
TCGA-DX-AB32
SARC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.M251T
DO220102
SARC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.M251I
TCGA-WE-A8ZX
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.M251I
DO51291
SKCM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.G252V
DO229035
LICA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.R240C
TCGA-A5-A0G2
UCEC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
DO41235
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
SIDM00334
Endometrial Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
ACH-000879
Endometrial/Uterine Cancer
CCLE
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
MFE-296
endometrium
COSMIC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240S
DO228948
LICA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240H
SIDM01961
Pancreatic Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
Showing 1 to 25 of 35 entries
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Drug responses associated with RFPL1 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
No data available in table
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All proteins holding degron of RVGIFLD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9HCM9
E3 ubiquitin-protein ligase TRIM39
LIG_APCC_ABBAyCdc20_2
457:463
RVGIFLD
APC,CDC20,FZR1
0.5818
More...
O75677
Ret finger protein-like 1
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5402
More...
O75678
Ret finger protein-like 2
LIG_APCC_ABBAyCdc20_2
305:311
RVGIFLD
APC,CDC20,FZR1
0.5402
More...
O75679
Ret finger protein-like 3
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5054
More...
Showing 1 to 4 of 4 entries
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