DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
RVGIFLD
Uniprot ID:
O75677
Source protein:
Ret finger protein-like 1
Source gene:
RFPL1
Class:
LIG_APCC_ABBAyCdc20_2
Location:
244:250
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5402
ASA_SCORE:
18.8571
COIL:
0.0264
CONS_SCORE:
0.9161
DSS_SCORE:
0.0338
HELIX:
0.0021
FCONS_SCORE:
1.4762
RIG_SCORE:
0.9295
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F259I
TCGA-49-AARQ
LUAD
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.F259I
DO51189
LUAD
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.0833
p.R240C
TCGA-A5-A0G2
UCEC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
DO41235
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
SIDM00334
Endometrial Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
ACH-000879
Endometrial/Uterine Cancer
CCLE
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R240C
MFE-296
endometrium
COSMIC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D239Y
TCGA-D1-A17Q
UCEC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1944
p.D239Y
DO41903
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1944
p.M251T
TCGA-DX-AB32
SARC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.M251T
DO220102
SARC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.S257F
TCGA-FW-A3R5
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1389
p.S257F
DO220859
MELA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1389
p.S257F
DO37406
SKCM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1389
p.D250N
TCGA-W3-AA1Q
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6932
p.D250N
DO219487
SKCM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6932
p.M251I
TCGA-WE-A8ZX
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.M251I
DO51291
SKCM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.V256I
TCGA-XK-AAIW
PRAD
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.V256I
DO51407
PRAD
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.L249V
DO224876
BRCA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.5654
p.R240S
DO228948
LICA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.G252V
DO229035
LICA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.S257Y
DO23543
LIRI
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1389
p.R240H
SIDM01961
Pancreatic Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R244Q
SIDM00656
Burkitt's Lymphoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01112
Osteosarcoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00879
Breast Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00849
Kidney Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01124
Non-Small Cell Lung Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM00641
Burkitt's Lymphoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01686
Chronic Myelogenous Leukemia
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.R244Q
SIDM01409
Bladder Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7329
p.I247L
SIDM01335
Kidney Carcinoma
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6063
p.G246E
ACH-001982
Metastasis
CCLE
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6087
Drug responses associated with RFPL1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RVGIFLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75677
Ret finger protein-like 1
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5402
More...
O75679
Ret finger protein-like 3
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5054
More...
Q9HCM9
E3 ubiquitin-protein ligase TRIM39
LIG_APCC_ABBAyCdc20_2
457:463
RVGIFLD
APC,CDC20,FZR1
0.5818
More...
O75678
Ret finger protein-like 2
LIG_APCC_ABBAyCdc20_2
305:311
RVGIFLD
APC,CDC20,FZR1
0.5402
More...