DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
RVGIFLD
Uniprot ID:
O75678
Source protein:
Ret finger protein-like 2
Source gene:
RFPL2
Class:
LIG_APCC_ABBAyCdc20_2
Location:
305:311
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5402
ASA_SCORE:
19.4
COIL:
0.0279
CONS_SCORE:
0.9536
DSS_SCORE:
0.034
HELIX:
0.0026
FCONS_SCORE:
1.3548
RIG_SCORE:
0.9368
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R301H
TCGA-28-5208
GBM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R301H
TCGA-4R-AA8I
LIHC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.V299I
TCGA-50-5072
LUAD
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1667
p.R301L
TCGA-77-7142
LUSC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.D311E
TCGA-AG-A002
READ
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.5647
p.R301C
TCGA-CV-5970
HNSC
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R301S
TCGA-EE-A2GT
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.S318F
TCGA-EE-A2MH
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1389
p.D311N
TCGA-W3-AA1Q
SKCM
TCGA
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6932
p.L301F
DO228631
GACA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.R312H
DO13647
GBM
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.A316V
DO228589
LICA
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1944
p.T307N
DO26270
LUAD
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.7055
p.R312C
DO26444
LUSC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.3056
p.P310S
DO221121
MALY
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.6752
p.E315G
DO38192
STAD
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2222
p.V295F
DO52412
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.0556
p.P300H
DO43907
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.1944
p.N303K
DO43755
UCEC
ICGC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.G313D
SIDM01263
T-Lymphoblastic Leukemia
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.G313D
SIDM01016
T-Lymphoblastic Leukemia
GDSC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.G313D
ACH-000995
Leukemia
CCLE
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
p.G313D
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
RVGIFLD
LIG_APCC_ABBAyCdc20_2
0.2778
Drug responses associated with RFPL2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of RVGIFLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75677
Ret finger protein-like 1
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5402
More...
O75679
Ret finger protein-like 3
LIG_APCC_ABBAyCdc20_2
244:250
RVGIFLD
APC,CDC20,FZR1
0.5054
More...
Q9HCM9
E3 ubiquitin-protein ligase TRIM39
LIG_APCC_ABBAyCdc20_2
457:463
RVGIFLD
APC,CDC20,FZR1
0.5818
More...
O75678
Ret finger protein-like 2
LIG_APCC_ABBAyCdc20_2
305:311
RVGIFLD
APC,CDC20,FZR1
0.5402
More...