Gene: pdgfc

Basic information

Tag Content
Uniprot ID E7FB33
Entrez ID 560564
Genbank protein ID
Genbank nucleotide ID XM_683962.7
Ensembl protein ID ENSDARP00000069196
Ensembl nucleotide ID ENSDARG00000077588
Gene name Platelet-derived growth factor C
Gene symbol pdgfc
Organism Danio rerio
NCBI taxa ID 7955
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MIPLLLLIVI SSLHQHESVA ESSHISKIHH ASTKEQNGVH ESQHEKVLSV TGDGIIQSPN 60
FPNKYPRNTV IVWQLVAVME SSRIQLTFDP RFGLEDAEEG TCKYDYVEVE EPVGGMVLGR 120
WCGSEMVPGP QLSKGNQILV RFVSDEYFPS DPGFSIRYSL LQQRQSEPEA PAVMPVWMQP 180
VEDLTEAVSA FNTMEEVMKY LEPERWQLDM DDLYKPTWQV LGKSFFHQKK SRGAVDLNLL 240
REDVRLYSCT PRNFSVSLRE ELKRTDAIFW PSCLLVKRCG GNCACCSYNC YDCQCSPTKV 300
AKKYHEVLML KHRTGGRGLQ KTLADVPLEH HEECNCVCKN DSD 343

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPDGFC102168934A0A452ET29Capra hircusPredictionMore>>
1:1 orthologPDGFC100062015A0A3Q2HV05Equus caballusPredictionMore>>
1:1 orthologPDGFC56034Q9NRA1Homo sapiensPublicationMore>>
1:1 orthologPdgfc54635Q8CI19CPOE12.5, E13.5Mus musculusPublicationMore>>
1:1 orthologPDGFCH2QQC3Pan troglodytesPredictionMore>>
1:1 orthologA0A481CL63Sus scrofaPredictionMore>>
1:1 orthologPDGFC100350272G1TDA1Oryctolagus cuniculusPredictionMore>>
1:1 orthologPdgfc79429Q9EQX6Rattus norvegicusPredictionMore>>
1:1 orthologpdgfc560564E7FB33Danio rerioPredictionMore>>

Gene ontology

GO ID GO Term
GO:0005615 extracellular space
GO:0016020 membrane
GO:0008083 growth factor activity
GO:0070851 growth factor receptor binding
GO:0005161 platelet-derived growth factor receptor binding
GO:0048568 embryonic organ development
GO:0048008 platelet-derived growth factor receptor signaling pathway
GO:0051781 positive regulation of cell division
GO:0030335 positive regulation of cell migration
GO:0008284 positive regulation of cell population proliferation
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0043406 positive regulation of MAP kinase activity
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0031954 positive regulation of protein autophosphorylation

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0165 Cleavage on pair of basic residues
KW-0217 Developmental protein
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0339 Growth factor
KW-0497 Mitogen
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR000859 CUB_dom
IPR029034 Cystine-knot_cytokine
IPR029817 PDGF-C
IPR000072 PDGF/VEGF_dom
IPR035914 Sperma_CUB_dom_sf

PROSITE

PROSITE ID PROSITE Term
PS01180 CUB
PS50278 PDGF_2

Pfam

Pfam ID Pfam Term
PF00431 CUB
PF00341 PDGF