Gene Page: PCMTD1

Summary ?
GeneID115294
SymbolPCMTD1
Synonyms-
Descriptionprotein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
ReferenceHGNC:HGNC:30483|Ensembl:ENSG00000168300|HPRD:08313|Vega:OTTHUMG00000164246
Gene typeprotein-coding
Map location8q11.23
Pascal p-value0.004
eGeneMyers' cis & trans
Meta

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type
rs16916610chr852528789PCMTD11152940.01cis
rs6998137chr852536827PCMTD11152940.02cis
rs12548130chr852558394PCMTD11152940.05cis
rs4873570chr852579315PCMTD11152945.878E-4cis
rs7014372chr852582500PCMTD11152940cis
rs4873573chr852601750PCMTD11152940.01cis
rs6986571chr852605268PCMTD11152940.05cis
rs4873584chr852639743PCMTD11152942.919E-4cis
rs7013360chr852713005PCMTD11152941.087E-4cis
rs763550chr852715464PCMTD11152940.01cis
rs6990379chr852716136PCMTD11152948.032E-6cis
rs16916856chr852739149PCMTD11152941.704E-4cis
rs10504130chr852757092PCMTD11152942.625E-4cis
rs17212214chr852831141PCMTD11152941.245E-5cis
rs16916961chr852831177PCMTD11152941.64E-4cis
rs6473667chr852840129PCMTD11152949.366E-4cis
rs11785805chr852841869PCMTD11152942.998E-5cis
rs16916968chr852844410PCMTD11152940cis
rs4873570chr852579315PCMTD11152940.05trans
rs7014372chr852582500PCMTD11152940.08trans
rs4873584chr852639743PCMTD11152940.03trans
rs7013360chr852713005PCMTD11152940.01trans
rs6990379chr852716136PCMTD11152940trans
snp_a-19932560PCMTD11152940.03trans
rs16916856chr852739149PCMTD11152940.02trans
rs10504130chr852757092PCMTD11152940.02trans
rs17212214chr852831141PCMTD11152940trans
rs16916961chr852831177PCMTD11152940.02trans
rs6473667chr852840129PCMTD11152940.07trans
rs11785805chr852841869PCMTD11152940trans
rs16916968chr852844410PCMTD11152940.1trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
NAKAMURA TUMOR ZONE PERIPHERAL VS CENTRAL DN 634384All SZGR 2.0 genes in this pathway
HORIUCHI WTAP TARGETS UP 306188All SZGR 2.0 genes in this pathway
WANG LMO4 TARGETS UP 372227All SZGR 2.0 genes in this pathway
OSMAN BLADDER CANCER UP 404246All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN 805505All SZGR 2.0 genes in this pathway
GRAESSMANN APOPTOSIS BY DOXORUBICIN DN 17811082All SZGR 2.0 genes in this pathway
MCBRYAN PUBERTAL BREAST 4 5WK DN 196131All SZGR 2.0 genes in this pathway
MCBRYAN PUBERTAL BREAST 6 7WK UP 197135All SZGR 2.0 genes in this pathway
NUYTTEN NIPP1 TARGETS DN 848527All SZGR 2.0 genes in this pathway
CUI TCF21 TARGETS 2 DN 830547All SZGR 2.0 genes in this pathway
IVANOVA HEMATOPOIESIS STEM CELL AND PROGENITOR 681420All SZGR 2.0 genes in this pathway
DOUGLAS BMI1 TARGETS DN 314188All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 6HR UP 953554All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 24HR UP 783442All SZGR 2.0 genes in this pathway
ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR UP 17496All SZGR 2.0 genes in this pathway
ZHANG BREAST CANCER PROGENITORS DN 14593All SZGR 2.0 genes in this pathway
CHUNG BLISTER CYTOTOXICITY DN 4429All SZGR 2.0 genes in this pathway
CHANG CORE SERUM RESPONSE DN 209137All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839928All SZGR 2.0 genes in this pathway